| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2747 |
|---|
| Symbol | |
|---|
| ID | 5613949 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3315715 |
|---|
| End bp | 3316263 |
|---|
| Gene Length | 549 bp |
|---|
| Protein Length | 182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640933666 |
|---|
| Product | nitroreductase |
|---|
| Protein accession | YP_001474482 |
|---|
| Protein GI | 157375882 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0778] Nitroreductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.501163 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGACGCTA TCGAATTACT GCTAACCCGT CAGTCATCTC CTCGTCTTGT AGCACCTGGT
CCCGACGAGA CTCAATTAAA AAACATTTTG GATGCGGCCG TGAGGGTTCC CGACCATGGG
GGCCTCACGC CATGGGAGTT TATTATCGCT CAGGGAGAAG GTTTATCCCG ACTGGGTGAG
GCCTTCCTCA ATGCCGTGAT AAAAAAAGGG GGGGATGAGA CCCTGCAAGG TAAGGTGAAA
GGGATGCCGC TACGTGCGCC TATGGTTATC GTGGTGGTGG CCAAACCAAA ACCACACCCT
AAGGTGCCTG AGTTTGAGCA GCTACTTGCA GCGGGCTGCG CGACGATGGC CATGCAACAG
GCGGCTTTTG CTCAAGGGCT TGGTGGCATA TGGCGTACCG GCGATATGGC ATTCGATAAG
CATCTTCATC AAGCGCTGGG CCTCGAGGGG AGTGATCAAA TTGTCGGCTT TCTGTATCTG
GGGACTCCCG CACTGAAGGC ACCGATAAAA GCGAAACGAG AGGGGGCACA TTTTGTTCGT
TATCTCTGA
|
|---|
| Protein sequence | MDAIELLLTR QSSPRLVAPG PDETQLKNIL DAAVRVPDHG GLTPWEFIIA QGEGLSRLGE
AFLNAVIKKG GDETLQGKVK GMPLRAPMVI VVVAKPKPHP KVPEFEQLLA AGCATMAMQQ
AAFAQGLGGI WRTGDMAFDK HLHQALGLEG SDQIVGFLYL GTPALKAPIK AKREGAHFVR
YL
|
|---|
| |