| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2740 |
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| Symbol | |
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| ID | 5610152 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3310562 |
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| End bp | 3311248 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933659 |
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| Product | putative macrolide efflux ABC transporter, ATP-binding protein |
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| Protein accession | YP_001474475 |
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| Protein GI | 157375875 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATAAAAG TGAGCGGATT AAAAAAAAAA TACCGGATGG GAGAGACCTC TGTTTTCGCC
CTCAGGGGGG TAGATTTTAC CATCAATGAA AATGAGTTTG TCGCGATTAT GGGGCCCTCA
GGCTCCGGCA AATCGACACT GATGAATATC ATAGGTTGTT TGGATAAACC CAGTGAAGGG
AGTTATCAGC TTAATCAACA AGAGGTCGCA AGCTTAGACG ATGATGCCCT GTCGGCAGTG
CGTAATAAGG AGATAGGCTT CGTCTTTCAA AGTTTTCATC TTTTACCCAG GATGACCGCA
CTGCAAAATG TCTTGTTGCC ACTGCGTTTT TCTAACCCTC CAAATGATGA CAGAACCTAT
GCCAGTGAAC TATTAACACG GGTGGGACTC GGTACCAGGC AAGAGCACCG CCCAAACCAG
CTTTCCGGTG GGCAAAGGCA GCGAGTCGCC ATCGCACGTT CGTTAGTCAA TCGCCCCACA
ATCCTACTCG CAGATGAGCC GACCGGGGCG TTAGACAGCA AGACATCGGT TGAGATCATG
GCACTGTTTA CCGAGCTGCA TAAGGCCGGC CAGACCATTA TCTTAGTGAC TCATGAAGAG
GAGGTCGCAG CCTATGCGCA GCGGGTGATA CGTATGCGTG ATGGAAATAT TGTTGAGATT
GAGCAGCGAG GTGAGTATGC GGCTTAA
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| Protein sequence | MIKVSGLKKK YRMGETSVFA LRGVDFTINE NEFVAIMGPS GSGKSTLMNI IGCLDKPSEG
SYQLNQQEVA SLDDDALSAV RNKEIGFVFQ SFHLLPRMTA LQNVLLPLRF SNPPNDDRTY
ASELLTRVGL GTRQEHRPNQ LSGGQRQRVA IARSLVNRPT ILLADEPTGA LDSKTSVEIM
ALFTELHKAG QTIILVTHEE EVAAYAQRVI RMRDGNIVEI EQRGEYAA
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