| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2727 |
|---|
| Symbol | |
|---|
| ID | 5614107 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3292248 |
|---|
| End bp | 3294071 |
|---|
| Gene Length | 1824 bp |
|---|
| Protein Length | 607 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640933646 |
|---|
| Product | ATP-dependent OLD family endonuclease |
|---|
| Protein accession | YP_001474462 |
|---|
| Protein GI | 157375862 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3593] Predicted ATP-dependent endonuclease of the OLD family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAA AAAAACTAAT AATTAACAAC TTTCGTGGTA TCGGATTTGC CGAAATTGAC
CTTGAGAACT TCACAACTCT TGTTGGGCCA AATAATATCG GTAAATCAAC TATCCTCAAT
GCGATACACT TAGTTTTAGA TAATAAAAAA CCGAAGCTAG AAGATTGGCC TGCTCAGCAA
GCGTCAGAAG AAGTTATGGA TATTATCTGT GAATTTGGAG ACCTTGAAGA TTGGGAAAAG
AGAAAGTCAG CAATTTCAAC TTTGCTACAC GAAGACTATT TAAAAGTAAA AATGTCAGCA
TGCTGGAACG CTGAGCAAAC CGATTATTCT TATGAATATT CGGTGTACTG CGTTGAAACG
CAGTACCCGT GGTCGGAACT CAATTTTACT AAGGCCAAAG CTGATGAAGT GTGTAAACCT
ATTTTCAAAG AGCTAGGTAT TACAAAAGCA GCAGAGTTTA ACGAGAGACA AGTAGAGTTA
GAGTCTTACA TCGCTGAAAA TTTGCCTGAA TTAGTAAGCT CTGTTAAGGA TTGGCATGTC
AAAAAGTTCG CTAACTCTCT ACAGCAAGCT GTTCCTCATG TGATGTATGT TCCGGCAAGT
TTTAAAATAG AAGATGAGTT GAAGGCTACA AATAATAGTC CTTTTTCGTT CTTATTTACT
AATAAGCTAT TTCCGAAAGT AAAAGGAGAT GAAAGCTATT CAGCTTACAT CGAAAAAGCT
ACGGAACTGC AAGATAAGTT AAAGGGAAAA GCTGAAGATG GTTCTGAAAT TGAGGGGTTA
GGAGACGCCT TGGGGGAAGT ATCAAAAACA CTTAACCAGA TATTAGATTT TGACTCTAAG
GTAAAACTCG CTGTTGGTGA CATAGATGTT GAACCTTTGT TTATGAAAGC TGCTACTTTC
CTAATTGACG ACGAAATAGA AACAAGCTTG CAGTATCAAG GAAGTGGTGT GCAGAGAGCT
TTAGCATTTG CAATGCTAGA AGCAAATGCA GAGGTTGAAT CATCTGTTCA AGGGGATCAA
AGAACAGTTG TGGTTCTATA TGAAGAACCA GAGCTATACA TTCATCCCCA CTTAATGCGT
AGGCTTAAAA ATACTCTGCA AACACGCTCA GAGTCACCTA AGTGGCAGGT AATCTGCTCA
ACACACTCTC CTTTCTTAAT TAATATTGCT GACAAACCCG AATCATTGAA GCTCATAAAG
AAAAACGCTG GGAATGCTCG TGCTGTACAT CAAGTGTCTT CTACCATTTT TGAGACCACT
GAAGATTATA ACGAAAGAGA TATATTGAGG GCCGCGTTAG ATTTCCACCC AACTGTTTGT
GAAAGCTTGT TTGCTAAACG AGTAGTGATT GTTGAAGGCG ACACTGAGGT CGCAGTTTTC
AGTATGATTT CCGAGCTTGC GAACAAATTA GATGTTCAAG ACAGTCTTGA TAAGGACACC
ACTGTTATAT CTGCGGGTGG TAAATGGACA ATTACTGCCT TGATAAAGGT ATTGAATGCA
CTAAAAATAG ACTATCGTGT AATCCATGAT ACTGATCGTA AAAACCTTTC TGATGCAGAG
TTGTTAGAGA AAGCAGCAAT TCACCCATTC AAGGCCAATG CCAAAATTGC TTCTGTCGCA
AATGCTGGTA GTGTTTTCTT GGTTGATGAT ACTTTTGAAC ATGTTTTATG GGATCAAGTA
GAGGGTGAAA AAGCTAAATC AACCGATAAG CCTTATAACT CATGGAAACG TGTTCGAGAT
TATATTGATG GCAAAGTCGA ACTCACTGCA AGGTGTGAAG CTACTTTAAA AGAGATTGTG
ACATTTGCAT TTGCAAAACA GTGA
|
|---|
| Protein sequence | MKLKKLIINN FRGIGFAEID LENFTTLVGP NNIGKSTILN AIHLVLDNKK PKLEDWPAQQ
ASEEVMDIIC EFGDLEDWEK RKSAISTLLH EDYLKVKMSA CWNAEQTDYS YEYSVYCVET
QYPWSELNFT KAKADEVCKP IFKELGITKA AEFNERQVEL ESYIAENLPE LVSSVKDWHV
KKFANSLQQA VPHVMYVPAS FKIEDELKAT NNSPFSFLFT NKLFPKVKGD ESYSAYIEKA
TELQDKLKGK AEDGSEIEGL GDALGEVSKT LNQILDFDSK VKLAVGDIDV EPLFMKAATF
LIDDEIETSL QYQGSGVQRA LAFAMLEANA EVESSVQGDQ RTVVVLYEEP ELYIHPHLMR
RLKNTLQTRS ESPKWQVICS THSPFLINIA DKPESLKLIK KNAGNARAVH QVSSTIFETT
EDYNERDILR AALDFHPTVC ESLFAKRVVI VEGDTEVAVF SMISELANKL DVQDSLDKDT
TVISAGGKWT ITALIKVLNA LKIDYRVIHD TDRKNLSDAE LLEKAAIHPF KANAKIASVA
NAGSVFLVDD TFEHVLWDQV EGEKAKSTDK PYNSWKRVRD YIDGKVELTA RCEATLKEIV
TFAFAKQ
|
|---|
| |