Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2712 |
Symbol | |
ID | 5613174 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3277498 |
End bp | 3278970 |
Gene Length | 1473 bp |
Protein Length | 490 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640933631 |
Product | RNA-directed DNA polymerase |
Protein accession | YP_001474447 |
Protein GI | 157375847 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3344] Retron-type reverse transcriptase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGACTT CAATCGAAGT TAGTGCACCT CCTGACAGCG CTCAATGGCA ATCCATTAAC TGGAAAGCGG TTAAGCAACA CGTATTAAAG CTTCAAATGC GCATTGCAAA AGCAACCCGA GAAGGTAAAC ACGGCAAGGC GAAAGCATTG CAGTGGATAT TAACTCACTC TAAATCAGCT AAATTGCTTG CTGTTAAAAG AGTTTCTCAA AACAAAGGCA GCAAAACACC TGGAATCGAC GGGATCATTT GGAACAGTGA TGCTCGTTGT ATAGGTGCGG TCAATCAACT GAGTAGAAAG GGCTATCATG CCAAACCGCT CAGGCGTATC TACATCCCCA AGAAAAACGG CAAACTCAGA CCTTTAGGCA TTCCCTGCAT GATAGATAGA GCGCAGCAAG CGCTTCATCT TCTCGCCTTG GAGCCTATTT CGGAAACGGT GGCCGACCTC AATAGCTATG GCTTTCGACC TAACCGAAGC GCAGCAGATG CAATTGCACA GTGCTTCAAA TGTTTATGCA TGAAGTGCTC TAGCCAATGG GTTCTTGAGG GTGACATCAA AGCTTGTTTC GATAAGATAG GTCATCAATG GCTCATCGAC AACATTCAAT TAGATAAGCG AATGCTGAAA CAATGGCTTG GATGTGGTTA TGTTGATAAA GGATTGTTCT ACAAAACAGC AGAAGGAACA CCGCAAGGTG GGATAATCTC CCCAACGCTG ATGTTGCTGA CGCTGGCTGG GTTAGAGCAG TTGGTTAAGT CTATTGCTTG TAAAACAGGG AATAGAGTCA ACTTTATCGG ATATGCAGAC GATTTTGTTA TCACAGGTTC TTCGAAGGAA GTGCTCGTTA ATGAAATCAA GCCGCAGCTA ATTGGTTTTC TACAGGAAAG AGGCTTAACA CTCTCTGATG AGAAAACGCA CATAACTCAT ATCGATGATG GTTTTGACTT TCTGGGATTC AATCTTAGAA AGTACAAAGG CAAACTGCTC ATTAAACCGA GCAAGAACAA CGTTCTATCA TTTTTGAGTA ATCTACGTGA ATTCATCAGA AAACATCCAA CAATCCCCGT TAACGATTTA ATCAAAATAT TGAATCCGAA ACTGAGAGGA TGGGCGAACT ATTATCGCCA CAGTGTTGCT AAGCAAGTTT TCGGTTATGT AGGCCATCAA CTTTTCTGGT TGTTATGGCG TTGGGCAGTT AGGCGTCATC CAACTAAAAG TAAAGACTGG GTGAGGCGTA AATATTATTT GGACGGTAAG GGACAATGGC AATTTCATGG TTGGCATAAA ATAGCGAACA TGGATTGTCG ATTTAACCTT GTCCAAATAG CTCAAACGCT CATAAAAAGA CATGTAAAAA TCAGAAGCGC AGCCATACCT TACGACCCAG AATACGAAGC TTACTTAAGT AAGCGGAAAT GGGCTAAGCA AGGCAGAAAC TCTTGGTTCG AACCTGTTTT AGCTGCGATG TAG
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Protein sequence | MMTSIEVSAP PDSAQWQSIN WKAVKQHVLK LQMRIAKATR EGKHGKAKAL QWILTHSKSA KLLAVKRVSQ NKGSKTPGID GIIWNSDARC IGAVNQLSRK GYHAKPLRRI YIPKKNGKLR PLGIPCMIDR AQQALHLLAL EPISETVADL NSYGFRPNRS AADAIAQCFK CLCMKCSSQW VLEGDIKACF DKIGHQWLID NIQLDKRMLK QWLGCGYVDK GLFYKTAEGT PQGGIISPTL MLLTLAGLEQ LVKSIACKTG NRVNFIGYAD DFVITGSSKE VLVNEIKPQL IGFLQERGLT LSDEKTHITH IDDGFDFLGF NLRKYKGKLL IKPSKNNVLS FLSNLREFIR KHPTIPVNDL IKILNPKLRG WANYYRHSVA KQVFGYVGHQ LFWLLWRWAV RRHPTKSKDW VRRKYYLDGK GQWQFHGWHK IANMDCRFNL VQIAQTLIKR HVKIRSAAIP YDPEYEAYLS KRKWAKQGRN SWFEPVLAAM
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