| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2692 |
|---|
| Symbol | |
|---|
| ID | 5611805 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3250824 |
|---|
| End bp | 3253004 |
|---|
| Gene Length | 2181 bp |
|---|
| Protein Length | 726 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640933611 |
|---|
| Product | peptidyl-dipeptidase Dcp |
|---|
| Protein accession | YP_001474427 |
|---|
| Protein GI | 157375827 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0339] Zn-dependent oligopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00136088 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGGAT TAACCCTCAA ACCACTCGTG TCAGCTATCG CACTGACTTT TGCTCTTGGC
GCATGTAGCT CATCTACTAC TGCAACAAAT GAAGCTAACG TGGCGCCGAA TGTCGTTGCA
CAACAGATTA TTGAAAATAA CGCAACGAAT CCTTTCTTTA AGCCATACGA TACCTATATG
GGTATTCCAG ATTTCGATAA GATCAAGACT GAGCATTATC TACCCGCCTT TAAAGCTGGT
ATTGCACAAC ATAAAGCTGA AATTCAAGCC ATTATTGATA ACCCGGATGC ACCGACCTTC
GCTAACACCA TCGAAGCGAT GGAGTTTTCC GGTGAGCTGA CAACGAAAGT CGCTAGCGTT
TTCTATAACC TGACCGGCGC AGATACCAAT GATGAGTTAC AGAAGCTCTC TAAAGAGATT
TCACCACTAC TCTCGGCTGC CGGTGACGAC ATCCTATTAA ACGATCAGTT ATTTCAAAAA
GTTAAAGCGG TATACGAACA GCGTGATGGA TTAAACCTCG ACGTTGCTGA AGCTAAGCTT
TTAGAAGACA CCTACAAGTC ATTCACTCGT GGTGGAGCAA ACCTAAGCGA AACGGATAAG
ACCAAGCTTA GATCATTGAA TGAAGAGATT GGCAAGCTGA GCCTTGAATT TGGCGATAAC
TTGCTTGCAG AAACTAACGC ATTTGAATTG GTCATCGACA ATAAAGCCGA CCTTGCAGGG
CTGCCAGCCG ATGTTATCAG CAATGCAGCG CAAACTGCGA CCAAGCGCGG CCATGAAGGG
AAATGGGTGT TCACCACATC ACGTCCCTCT ATCACACCGT TTTTAACCTA TGCAGATAAT
CGCGAGCTAC GCGAAAAAAT CTATAACGGT TACATCGAGC GCGGTAATAA CGACAACGCT
AACGACAATA AAAAGCTTCT AGCCAAGATG GCTGCACTTC GTGCCGAACG TGCACAATTG
ATGGGCTACA AAACCCATGC ACATCTAGTG CTCGAAGAGC GTACGGCCCA AACACCTGAA
AATGTATATG GACTCTTAAA TAAGGTTTGG CCTGCAGCCC TGGGACAAGC GAAAGCTGAA
GTCGCCGTAA TGCAGGAACT TATCGACTCT GAAGGCGGTG ACTTCAAGTT GGCAGGTTGG
GACTGGGCAT ACTATTCAGA CAAGATCCGT GTTGCTAAGT ACAGCTTTAA TGAACAGCAG
ACTCGTCCGT ATTTCTCACT GGAGAATACA CTTAAGGGCG TATTCTACAC GGCTAACCGT
CTCTTCGGAA TAACAGTTAA AGAGCGTACC GACCTGCCTA AGTACAACGA TGAAGTACGT
ACATGGGAAG TATTCGACAA AGACGGCTCA CTAATGGCCA TCTTCATGGG CGATTACTAC
GTACGTGACT CTAAGCGTGG CGGAGCATGG ATGAACTCCT ACCGTCAGCA ATACAACATG
AATGGCGTAG ATTCTAAGCC TATCATTGTA AACGTGTTGA ACTATCCTCG TCCGGTCGGC
GATGAGCCTG CACTTTTAAC ATTCGATGAA GCCAGCACCC TATTCCATGA ATTTGGTCAC
GCACTGCACG GTATGCTTTC CGATGTTAAG TATCGCTCAC AAGCGGGTAC CTCTGTACCA
CGTGACTATG TTGAGTTCCC ATCTCAAGTG ATGGAAAACT GGATGACACA ACCTGAAGTA
TTGGCACAAT TTGCTAAGCA CTACAAAACA GGTGAAGTGA TCCCACAGGA ACTTGTTAAG
AAGATCCAGG CAGCCAGTAA GTTCAACCAA GGTTTTGCTA CCGTTGAATA TATGGCCGCA
ACTAAACTCG ATCTCGATTG GCACACTGTC ACAGACTTCA CGCCAAAAGA TGCTGCAGCA
TTCGAAGCTG AGTCACTGAA CAAGATGGGC TTGATCAGCG AAATTGCGCC GCGTTACCGC
AGCACTTATT TTGCACACAT CTTCTCTGGT GGATACTCGG CAGGTTACTA CAGCTACCTA
TGGTCTGATA TTTTAGGAGC CGATGCTTTC GAAGCGTTCA AAGAAAACGG TATTTTCGAT
AGAGCCACCG CCGATGCATT TAGAAATAAC GTGTTATCAC AAGGTGGAAG CGAAGATCCA
ATGAAGCTTT ACAAGCAGTT CCGTGGTAAA GAAGCAGGAA TCGATCCTCT GCTTCGTAGC
CGTGGTTTAC TCGCTAAGTA A
|
|---|
| Protein sequence | MKGLTLKPLV SAIALTFALG ACSSSTTATN EANVAPNVVA QQIIENNATN PFFKPYDTYM
GIPDFDKIKT EHYLPAFKAG IAQHKAEIQA IIDNPDAPTF ANTIEAMEFS GELTTKVASV
FYNLTGADTN DELQKLSKEI SPLLSAAGDD ILLNDQLFQK VKAVYEQRDG LNLDVAEAKL
LEDTYKSFTR GGANLSETDK TKLRSLNEEI GKLSLEFGDN LLAETNAFEL VIDNKADLAG
LPADVISNAA QTATKRGHEG KWVFTTSRPS ITPFLTYADN RELREKIYNG YIERGNNDNA
NDNKKLLAKM AALRAERAQL MGYKTHAHLV LEERTAQTPE NVYGLLNKVW PAALGQAKAE
VAVMQELIDS EGGDFKLAGW DWAYYSDKIR VAKYSFNEQQ TRPYFSLENT LKGVFYTANR
LFGITVKERT DLPKYNDEVR TWEVFDKDGS LMAIFMGDYY VRDSKRGGAW MNSYRQQYNM
NGVDSKPIIV NVLNYPRPVG DEPALLTFDE ASTLFHEFGH ALHGMLSDVK YRSQAGTSVP
RDYVEFPSQV MENWMTQPEV LAQFAKHYKT GEVIPQELVK KIQAASKFNQ GFATVEYMAA
TKLDLDWHTV TDFTPKDAAA FEAESLNKMG LISEIAPRYR STYFAHIFSG GYSAGYYSYL
WSDILGADAF EAFKENGIFD RATADAFRNN VLSQGGSEDP MKLYKQFRGK EAGIDPLLRS
RGLLAK
|
|---|
| |