Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2681 |
Symbol | |
ID | 5611857 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3238446 |
End bp | 3238853 |
Gene Length | 408 bp |
Protein Length | 135 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640933600 |
Product | hypothetical protein |
Protein accession | YP_001474416 |
Protein GI | 157375816 |
COG category | [S] Function unknown |
COG ID | [COG3304] Predicted membrane protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.95193 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.733231 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCAGTAT TACGTTTAAT CTTTAACATT GCATGGTTTG TTCTCGGCGG ATTTGTTATG GGGTTAGCCT GGTGGATCGC AGGCTTACTC TGTTATATCA GTATTATCGG CATTCCATTT GGGCGAGCCT GTTTTGTCAT CGGTGAAATG ACCTTCTGGC CATTCGGGCA AGATCATATG AGTAGAAGCA GCCTGACAGG CAGTGAGGAT ATAGGTACAG GTGCATTTGG TACCGTTGGC AATATCGTCT GGTTTTTACT ATTTGGGATC TGGCTTGCAA TAGGTCACAT TACTCACGCG TTGGCATGTT TCGTTACCAT TATCGGGATA CCTTTTGGTA TTCAGCACCT GAAATTAGCA ATTTTAAGCT TAACCCCTAT TGGGCAGACT GTTGTCACTA AGGCATAA
|
Protein sequence | MAVLRLIFNI AWFVLGGFVM GLAWWIAGLL CYISIIGIPF GRACFVIGEM TFWPFGQDHM SRSSLTGSED IGTGAFGTVG NIVWFLLFGI WLAIGHITHA LACFVTIIGI PFGIQHLKLA ILSLTPIGQT VVTKA
|
| |