Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2669 |
Symbol | ushA |
ID | 5612340 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3226352 |
End bp | 3228061 |
Gene Length | 1710 bp |
Protein Length | 569 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640933588 |
Product | bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor |
Protein accession | YP_001474404 |
Protein GI | 157375804 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000803412 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0151204 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAAATA AGCTAATAAA AGGTTTAGTT GCAACTGCAG TACTAGTGGC ATTAACTGGT TGTGGTAGTG ATAACGATGA CAACGAAGTT GTTCTGCCTG CAACATGTGC TGAAGCCGGT GAAGCTTGTA CAATTTTCAC CGTACTTCAC ACCAACGATA ACCATGGTCG TTTCTTTGAA AACAAATACG GCGAGTACGG AATGGCGGCT CGTAAGACGC TGATCGATCA GATCCGTGCT GAAGTTGAGT CAAACGGTGG TGAGTCACTC TTACTTTCCG GTGGTGATGT GAACACAGGT GTACCAGAGT CAGATTTGCA AGATGCACGT CCTGATTTCG TCGGTATGAA CCTGATGGGT TATGACGCTA TGGCTGTCGG TAACCACGAG TTTGACAATC CATTAGAAAC AGTTGATATG CAGCGTGAAC TGGCTAACTT CCCTATGTTA GCGGCTAACA TTTATGACAA AGTGTCTGGC GCTCGTTACT TCGAACCATA CAAGGTATTC GATGTTAATG GTCTTCGCAT CGCGGTTGTC GGTTTAACGA CAGAAGATAC TGCTCAAATC GCTAACCCTG AGTTTATTGG TGGTCTTGAG TTTACCGATC CAAAAGAAGA ACTTAAGAAA GTTATCCAGG ACATTAAAGA CGCCGACGCG GCTGACTTGG TCTTCGCTAC TACTCATATG GGTCACTACG CCGATGGTAA CAACGGTAAC AACGCCCCTG GTGATGTTGC TCTGGCTCGT GCAATGGCTG AAGGTGAGCT AGCTGCTGTT ATCGGTGGTC ACTCTCAGAA CCCAGTTTGT ATGGAAGGTG ATGCGTATGA TCCTGAGTTC ACCGCTGGTG GCGAATGTAA GCCAGACGTT CAGAACGGTA CTTTCATCAT GCAGGCTCAC GAGTGGGGTA AGTATGTTGG ACAAGCTAAC TTTGAATACT TCAATGATAA GCTACACTTA GCCAGCTACA AGTTAATTCC TGTTAACTTG AAGGAGAAGA ACGAAGAGGG CGAACGTGTC CTTATCGGTG AAGCAATCAC GCCAGATGCT ACTGTACTTG AAATTATGCA GCAGTATCAG GATAAAGGTC AGGAAGAGCT TCTTGAAGTT ATCGGTTCTA CCGATGGCAA GCTTGAGGGT GACCGTGGCG TTGTTCGTAC ACAACAGACT AACCTGGGCC AACTGATTGC CCAAGCGCAG CGTACTAAAG TTGATGCCGA TTTTGCGGTA ATGAACTCTG GTGGTGTCCG TGATTCTATC GAAGCCGGTG AAATAACATA CAAAGATGTA CTGACAGTGC AGCCATTTGG CAACTCAATC ACCTTGAGCA CACTGACAGG TGCTGAGATC ACTGAGTACC TGAATGTCGT TGCTACTGTA GATATCGGTG AAACTGGTGC TGGTGCATAC CCTCAACTTG CGGGTATTAA GATGGATGTT GATTGTGAAG CTAAGACCGT CGCTATTAAC GACATCAATG GCAAAGGTTA TGACGCTGCT TCAACTTATA CCTTCACTGT ACCTAGCTAC AATGCCGCAG GTGGTGATGG CTACCCGGTA CTGACTCCTG TTATGACTGG TTATGTTGAT GCTGAAGTTA TGTACACCTT CATCAAAGAT ACTGGTGATA TCAAGGTTGC TGATTTCGCT CCTGTAGCGA GTGACATTCA GTTCTTGAAC AGTAACAGCA CTTTAGCTTG TCAGCGTTAA
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Protein sequence | MTNKLIKGLV ATAVLVALTG CGSDNDDNEV VLPATCAEAG EACTIFTVLH TNDNHGRFFE NKYGEYGMAA RKTLIDQIRA EVESNGGESL LLSGGDVNTG VPESDLQDAR PDFVGMNLMG YDAMAVGNHE FDNPLETVDM QRELANFPML AANIYDKVSG ARYFEPYKVF DVNGLRIAVV GLTTEDTAQI ANPEFIGGLE FTDPKEELKK VIQDIKDADA ADLVFATTHM GHYADGNNGN NAPGDVALAR AMAEGELAAV IGGHSQNPVC MEGDAYDPEF TAGGECKPDV QNGTFIMQAH EWGKYVGQAN FEYFNDKLHL ASYKLIPVNL KEKNEEGERV LIGEAITPDA TVLEIMQQYQ DKGQEELLEV IGSTDGKLEG DRGVVRTQQT NLGQLIAQAQ RTKVDADFAV MNSGGVRDSI EAGEITYKDV LTVQPFGNSI TLSTLTGAEI TEYLNVVATV DIGETGAGAY PQLAGIKMDV DCEAKTVAIN DINGKGYDAA STYTFTVPSY NAAGGDGYPV LTPVMTGYVD AEVMYTFIKD TGDIKVADFA PVASDIQFLN SNSTLACQR
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