| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2665 |
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| Symbol | |
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| ID | 5612587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3221481 |
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| End bp | 3222707 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933584 |
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| Product | Bcr/CflA subfamily drug resistance transporter |
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| Protein accession | YP_001474400 |
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| Protein GI | 157375800 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0126331 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00560959 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCAAACAG GTCCAATTCA AGCGCAAACC GTTTCCAAAC CCGCAGCCAT CTTAAACCTT
GCCCTACTGA TCCCTATGTT ATCGGCGATA GTAGCAATCA CCCCATTGGC AATCGACATG
TACCTACCGG CCATGTCTAC CTTAGCCGCG AGTTTTCATT CCGACATCAC TACGGTACAG
CAATCTTTAA GCCTATATTT GGCGGGTTAT TCCTTGGGAA TGCTCTGTTT TGGGCCATTA
GCCGACCGAA TAGGCAGACG CCCACTGGTC ATTATGGGTT TGACAGGCTT TATGTTGATC
AGCCTGGCAT TGGCTTTTGT CACCAGTATC GAGGTGTTTC TTACGCTGCG GTTCGCCCAG
GCATTTATCG GCGCCGCCGC AACCGTCGTT GTGCCAGGGT ATATAAAAGA GGTCTATGGA
GAGAATACGG CCAAAGGTAT GTCCTATGTC AGCCTGATCA TGATGTTGGC ACCACTGCTG
GCCCCCAGTC TGGGGAGTTT AATTTTAGAG TTTGGTGAGT GGCACCTTAT CTTTTTTATC
TTAGCTTTTT ATGCCTGCAT CCTGTTATCT CTGGTGCTAT GGAAGCTGAA AATGCCCAGT
GACAGCGATA AAGGAAACCG TAGCCAGAAG TCTTTCTTCG GCGCCTATGC GGTCGTATTC
ACTAAACCCG GAGTCAAACT GCATATTGCC AGTGGCGTAT TAACCTCATT TGCCTTTTTT
TGCTACCTTA CCGCTTCACC CTTCGTCTAT ATGGAGGTAT TCGGTCTTGA TAAATCTCTG
TTCGCCATAC TGTTTAGTAC CAATGTAGGC GCTCTCATGT TGGCCAACGT GATCAACAGC
CGTATCGTAG GCCGTTATGG TTCGAGAAGA ATGCTCAGAG TATCGACCAT ACTGGCCATG
CTTGCCGGTT CGGCGCTGTT TCTGGTGAAC TGGTTTGGGT TGAGCCTCTA TTTTACTGTC
GCAACCCTTA TTCCTTTCAT GGGGTTTCTC GGTGTAATGT CAGTCAATGC CGACGCGATA
GTATTAATGA AATTTAAACA GGAAACCGGT ACGGCTACCG CGGTCATTGG CACTCTTCGT
TTCGGGTGCG GTGCGCTCGC GGGTCCATTA TTAGCCCTGT TTTATACCGG AACAGCAGTC
CCCTTCTCAG CTCTGATGTT GAGCTCTGTG GTCTTAGTAG GAGTCTGTCA GTTTTATGCA
CCTACAGGTG TTCAAAACCC AAATTAA
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| Protein sequence | MQTGPIQAQT VSKPAAILNL ALLIPMLSAI VAITPLAIDM YLPAMSTLAA SFHSDITTVQ
QSLSLYLAGY SLGMLCFGPL ADRIGRRPLV IMGLTGFMLI SLALAFVTSI EVFLTLRFAQ
AFIGAAATVV VPGYIKEVYG ENTAKGMSYV SLIMMLAPLL APSLGSLILE FGEWHLIFFI
LAFYACILLS LVLWKLKMPS DSDKGNRSQK SFFGAYAVVF TKPGVKLHIA SGVLTSFAFF
CYLTASPFVY MEVFGLDKSL FAILFSTNVG ALMLANVINS RIVGRYGSRR MLRVSTILAM
LAGSALFLVN WFGLSLYFTV ATLIPFMGFL GVMSVNADAI VLMKFKQETG TATAVIGTLR
FGCGALAGPL LALFYTGTAV PFSALMLSSV VLVGVCQFYA PTGVQNPN
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