| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2653 |
|---|
| Symbol | metG |
|---|
| ID | 5612598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3207689 |
|---|
| End bp | 3209767 |
|---|
| Gene Length | 2079 bp |
|---|
| Protein Length | 692 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640933572 |
|---|
| Product | methionyl-tRNA synthetase |
|---|
| Protein accession | YP_001474388 |
|---|
| Protein GI | 157375788 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG0073] EMAP domain
[COG0143] Methionyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00398] methionyl-tRNA synthetase
[TIGR00399] methionyl-tRNA synthetase C-terminal region/beta chain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.998721 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.311411 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAATT CACAACGTAA AATCCTGGTG ACAAGCGCAC TTCCATACGC CAATGGACCT
ATCCATTTAG GCCATATGCT GGAATATATT CAAACCGATA TTTGGTCACG ATTCCAAAAA
CTTCGTGGAC ATGAATGTCA CTATATCTGT GCCGATGATG CCCATGGTAC GCCTATCATG
CTTAAGGCTC AGCAGCTGGG TATTGAGCCG GAAGAGATGA TAGCTCAGGT CAATAAAGAG
CATCAGCAGG ATTTTGCTGA CTTCAATATC AAATTTGACA ATTTCCACAG CACTCACAGT
GTTGAAAACC GCGAACTTTC GGGTGAAATC TACCTCAAGT TACGTGATGC CGGTTTTATC
AAGACTCGCA CTATCTCGCA GTTATTTGAT CCAGAAAAGT CGATGTTTCT TCCGGACCGC
TTCGTTAAAG GCACCTGCCC TAAGTGTAAG AGTGAAGATC AGTACGGCGA TAACTGTGAT
AACTGTGGCG CCACATACAA TCCTACAGAT CTGATTGATC CTAAATCGGC CGTATCTGGT
GCAACTCCTG TGATGAAGGA CTCTGAGCAT TTCTTCTTCG ACCTGCCTGC ATTTGAAAAC
ATGCTTAGCG AGTGGACTCG CTCTGGCGCA ATTCAAGATG AGATCGCAAA TAAGCTAGCT
GAATGGTTCG AACAGGGCCT GCAGCAGTGG GACATCAGCC GTGATGCCCC TTACTTCGGC
TTCGAGATCC CTGATGCGCC GGGTAAGTAC TTTTACGTAT GGCTCGATGC CCCTATCGGT
TACATGGGTT CGTTTAAAAA CCTGTGTGAC AGACGTGAAG ATCTTAACTT CGACGACTTC
TGGTCTAAAG ACTCTACTGC CGAGGTGTAT CACTTCATCG GTAAAGATAT CGTTAACTTC
CACAGTTTAT TCTGGCCAGC CATGCTCGAA GGTGCGGGTT ACCGTAAACC CACCAGTGTA
TTCGCTCACG GCTATGTCAC GGTTAACGGC GCTAAGATGT CAAAGTCTAA AGGCACCTTT
ATCAAGGCCC GTACTTACCT TGATAACTTA GATCCTGAAT ACCTGCGTTA TTACTATGCG
GCTAAGCTCA GCAATCGTAT TGACGATCTC GACCTTAACC TGGAAGATTT TGCCCAGCGT
GTTAACTCAG ATCTGGTTGG TAAGTTAGTT AACCTGGCTT CACGCACCGC GGGCTTTATC
AGCAAGCGTT TCGATGGCAA GTTGGCTAAA ATCGCCGACA CCACACTTGA AGAGACTTTC
CTGGCGAAGC AGGAGGTCAT TGCAGATCTC TACGAGAACC GTGAATTCGG TAAGGCGATG
CGTGAGATCA TGGCACTGGC TGATATCGCC AACGCTTATG TTGCCGACGC TGCACCATGG
CAGTTAATTA AAGATGAGGC TAAGCAAGAT GAGGCACATC AGGTGTGCAG TAATGCACTA
AACCTGTTCC GCATCTTAGT GACTTATCTC AAGCCGGTAC TGCCAAAACT TGCAGACGAT
GTCGAAGCCT TCCTTCAGTT CCCGCTTACC TGGGACAATT TAGGCGCCGA TCTCGCCGGT
CATGAAATTG CTAAGTTCAA AGCCTTGATG CAACGCATCG ATATGAAAAA TATCGAAGCT
ATCATCGAAG CGTCGAAGGA CAACTTGCAA GCAACCACCG AGGCTGCACC AGAGAAGAAA
GCTAAGAAAT CGGCTGAAAC AGCTGATGTC GCAGTAGATA CCCGCAGTCC GCTGGAAAGC
GACCCTATCT CAGATGAGAT AAGCTTCGAT GATTTCGCCA AACTCGACTT GCGTATTGCA
CGTATCGCTA AGGCCGAACA TGTACCGGAA GCCAATAAGC TACTGAAACT TCAGTTAGAC
TTAGGCGGTG AGACCAAGCA GGTCTTTGCC GGTATCAAGT CAGCTTATGC GCCGGAAGAT
CTGGAAGGCA AGCTCACCGT GATGGTGGCC AACCTTGCGC CGCGTAAGAT GCGCTTCGGT
ATGTCTGAAG GCATGGTGCT TGCTGCGGGT CCCGGTAACA AAGATCTGTG GATACTGGAG
CCTCACGAAG GTGCCCAACC GGGTATGCGA GTTAAGTAA
|
|---|
| Protein sequence | MANSQRKILV TSALPYANGP IHLGHMLEYI QTDIWSRFQK LRGHECHYIC ADDAHGTPIM
LKAQQLGIEP EEMIAQVNKE HQQDFADFNI KFDNFHSTHS VENRELSGEI YLKLRDAGFI
KTRTISQLFD PEKSMFLPDR FVKGTCPKCK SEDQYGDNCD NCGATYNPTD LIDPKSAVSG
ATPVMKDSEH FFFDLPAFEN MLSEWTRSGA IQDEIANKLA EWFEQGLQQW DISRDAPYFG
FEIPDAPGKY FYVWLDAPIG YMGSFKNLCD RREDLNFDDF WSKDSTAEVY HFIGKDIVNF
HSLFWPAMLE GAGYRKPTSV FAHGYVTVNG AKMSKSKGTF IKARTYLDNL DPEYLRYYYA
AKLSNRIDDL DLNLEDFAQR VNSDLVGKLV NLASRTAGFI SKRFDGKLAK IADTTLEETF
LAKQEVIADL YENREFGKAM REIMALADIA NAYVADAAPW QLIKDEAKQD EAHQVCSNAL
NLFRILVTYL KPVLPKLADD VEAFLQFPLT WDNLGADLAG HEIAKFKALM QRIDMKNIEA
IIEASKDNLQ ATTEAAPEKK AKKSAETADV AVDTRSPLES DPISDEISFD DFAKLDLRIA
RIAKAEHVPE ANKLLKLQLD LGGETKQVFA GIKSAYAPED LEGKLTVMVA NLAPRKMRFG
MSEGMVLAAG PGNKDLWILE PHEGAQPGMR VK
|
|---|
| |