| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2641 |
|---|
| Symbol | |
|---|
| ID | 5612876 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3196098 |
|---|
| End bp | 3196979 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640933560 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001474376 |
|---|
| Protein GI | 157375776 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.332337 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0619929 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTAAAAA AATTAGGCAT CTCAGTTTTA GCTCTGATGG TTGCTACCCC CTGTTTAGCT
ACAGAGGACA GTCAATTAGT CAGTGAAACT GTGATTAGAA TTGGAGGATT TTACTCTAAT
TCCAATTCCA CTATGGATGT TACTAATCCC ATTTTAGGTG AAGACTTTAA GATTGATTTC
GAGCAAGACC TGAATCTTGA AGAGTCTCAA TTTCTGCCTT TTTTCGAAAT ATTTCATCAT
TTCAACGATA AACACCTTAT GTTTATCGAC TGGAAACAAT TACATAGAAG TGCAACAGTC
CAGAGCCTCT CGACACCATT TCAGGTCGAT CTTGACGACA AGATATTCGA TGTAAAGCTT
GGCAGTCAAC TCAAGACGAC ACTCAATATC GATATCGCAA GAATTGGTTA TGGCTATAAC
TTCTATCATG GCAATAACTT CAACATAGGC GTCTCACTGG GTCTACACGC CATGTTTATC
AAAACCGGAT TTGAAGGTAA AGTGGGCACC TGTATCGAAG GCGAAAATAT CGATGATTGT
GGGATAGCTG CGATCCCAAA TGTTGTAGAT GAAAAAATAA CAGCGCCACT TCCAGACATA
GGGCTGTATG GTACCTATGA GTTCTCACCG GGATTCAGTT TCAGGGCTCA CGCTCAGTAT
TTTCAAATAA AACTCGACGA CTTAGATGGG CGACTGATAG ATGTGAGAGC CGGGATTGAA
GCCGAAATAT CCGAGAACTG GCATATGACT GCCGCATTTA ACTATTATGA GGTCGATGTA
GACTACGAAC AAAAATCGGG TATTGATGAC GTTAATATTG CCAACTATAA CCTGTCATAC
AGTTTTATCG GACCTATGCT GTCTGTAAGC TACCGTTTTT AA
|
|---|
| Protein sequence | MVKKLGISVL ALMVATPCLA TEDSQLVSET VIRIGGFYSN SNSTMDVTNP ILGEDFKIDF
EQDLNLEESQ FLPFFEIFHH FNDKHLMFID WKQLHRSATV QSLSTPFQVD LDDKIFDVKL
GSQLKTTLNI DIARIGYGYN FYHGNNFNIG VSLGLHAMFI KTGFEGKVGT CIEGENIDDC
GIAAIPNVVD EKITAPLPDI GLYGTYEFSP GFSFRAHAQY FQIKLDDLDG RLIDVRAGIE
AEISENWHMT AAFNYYEVDV DYEQKSGIDD VNIANYNLSY SFIGPMLSVS YRF
|
|---|
| |