| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2632 |
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| Symbol | |
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| ID | 5613617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3183337 |
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| End bp | 3183987 |
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| Gene Length | 651 bp |
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| Protein Length | 216 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933551 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_001474367 |
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| Protein GI | 157375767 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR01662] HAD-superfamily hydrolase, subfamily IIIA |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.861911 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000131082 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGCAAT ATGAGTTGGT GATATTCGAC TGGGATGGAA CCTTAATGGA TTCTATCGGT
AAAATTGTGA ATTGTATGCA ACAGACGGCG CTGACACTGA ATGTCTCTAT GCCTTCAGAG
CATGCTGTCC GGGATATCAT CGGTTTATCT ATGAATGAGG CGCTTAATGT TCTTCACCCC
GATGGGAGTT CCGATTTCCA TGGTGAGATG ATTGAAGTTT ATCGCCAGCA GTATCTCAAG
CTCAATACAA CACCTAGCCC CCTGTTCGAT GGTGTCGAAT CACTGCTAAC TCAGCTTAAT
CAAATTGGCT ACCAGATTGC CGTTGCGACA GGTAAAGCTA GAGCCGGTTT AAATCGGGTA
ATGGGTGAGA CGGGTCTGGA CTTTCATTTC ATTGCCAGCA GATGTGCTGA TGAGGCGCAG
AGTAAACCTA ATCCTGAGAT GATTTTTCAG TTGCTTAATG AACTGAATAT AGCGCCGGAA
AAGGCTGTCA TGATTGGTGA TTCGGTACAC GATCTTAATA TGGCTAACAA TGCCGGTATC
GATGCAATTG GGGTTGATTA TGGTGCTCAC GGTATAGAAC AGCTGCAGCA AGCGAACCCT
AAGGTGATAA TAAGCTCACC GTTAGAGTTA CTTCAGCATC TGGGACATTA A
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| Protein sequence | MKQYELVIFD WDGTLMDSIG KIVNCMQQTA LTLNVSMPSE HAVRDIIGLS MNEALNVLHP
DGSSDFHGEM IEVYRQQYLK LNTTPSPLFD GVESLLTQLN QIGYQIAVAT GKARAGLNRV
MGETGLDFHF IASRCADEAQ SKPNPEMIFQ LLNELNIAPE KAVMIGDSVH DLNMANNAGI
DAIGVDYGAH GIEQLQQANP KVIISSPLEL LQHLGH
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