Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2597 |
Symbol | pheT |
ID | 5613451 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3146468 |
End bp | 3148855 |
Gene Length | 2388 bp |
Protein Length | 795 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640933516 |
Product | phenylalanyl-tRNA synthetase subunit beta |
Protein accession | YP_001474332 |
Protein GI | 157375732 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0072] Phenylalanyl-tRNA synthetase beta subunit |
TIGRFAM ID | [TIGR00472] phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0200655 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATTTA GTGAATCTTG GCTTCGTGAG TGGGTAAACC CAAGCATTAG TCGTGAAGAG TTATCCCATC AAATCACCAT GGCTGGTTTG GAAGTGGATG GTATTGAAGG TGTTGCCGGT GAGTTCAGCG GTGTTATCGT GGGTGAAGTT GTCGAATGTG GTCAACACCC GGATGCCGAT AAGCTACGAG TAACAAAGAT CAATGTCGGT GAAGATGAGT TGATCGACAT CGTTTGTGGC GCACCTAACT GTCGTCTGGG TATTAAAGTT GCAGTGGCTA TGGTCGGTGC AGTACTACCC GGTGACTTTA AGATTAAGAA AGCCAAACTA CGCGGTGAGC CGTCGTTTGG TATGCTTTGC TCATACGGTG AGCTAGGCAT AGACGTTGAA AGCGATGGTA TTCTCGAGCT ACCAGTCGAT GCGCCAATTG GTGCAGACCT TCGTGATTAC TTGAGTCTTA ATGACGCCGT TATCGATGTT GACTTGACAG CTAACCGTGC AGACTGTCTC GGTATGGCAG GCCTTGCCCG TGAAGTGGGT GTATTAAACC GTCAGTCTGT GACTGAGCCA ACTTGGGAAG CGGTTAGCCC AACGATTGAT GACGCTATCA AGATCGATCT TCAGGCGCCG GCATTTTGTG CACGTTATTT AGGTCGTGTG GTTAAAAACG TCAACGTGAA AGCCGAATCG CCACTTTGGA TGCAAGAGAA GTTGCGTCGC AGTGGTATCC GCTCAATCGA TCCTATTGTC GATATTACTA ACTACGTGTT GATCGAATTC GGTCAGCCTA TGCACGCGTT CGATCTTGCT CAACTGGCAG GTGACATACA AGTACGCATG GGAAGTGGTG ATGAGAAGCT AACACTGCTT GATGGTAAAG AGATCACTGT TCCTGCTGAC ACTCTAGTCA TTAGCGATCA AGAAAGGCCT CTGGCGCTTG CTGGTGTCTT TGGTGGCGAA TACTCAGGTG TGAACACCGA TACTCAGGAC ATCATGCTCG AGTGTGCGTT CTTCGCACCT CTAGCCATCT TAGGTAAGGC TCGTCGTCTT GGCCTGCACA CAGACTCTTC ACATCGCTTC GAGCGTGGTG TTGACCCTGA GCTGCAGCAT AAGGTGATGG ATCGCGCTAC ACGTCTGGTA CTCGATATCT GTGGCGGCGA AGCGGGTCCT GTTGTCGAGG CTAAATCAGA AGAGCATCTT CCTAAGCCTG TTGAGATCGT TTTGCGTCGT AGCAAGCTTG ACCGAATCCT GGGTCACCAT ATCTCTGATG CCGAAGTGAC TGAGATCCTT GAGCGTCTTG GCTTTGATGT AACAGTGAAT AGCGATACCT GGGAAGTGAC GACGGCAACG TATCGTTTCG ATATGGCTAT CGAAGAAGAC TTGATTGAAG AAGTTGCCCG TATCTACGGT TACAACAATA TCCCTAACAC AGCGCCTGTA GCATCCTTAA GCATGCCTGA TCATAAAGAA TCAGATATCA GCTTAAAGCG TGTTCGCAGC ATGCTTGTTG CCCGTGGTTT CCAGGAAGCG GTGACTTATA GTTTCGTCGA TCCTAAGTTG CAAAACTTAG TTCATCCGGG TGAAGAGGCG ATGATATTGC CGAACCCAAT CTCTGTTGAG ATGTCAGCGA TGAGACTATC GATGTTTACC GGTCTTTTAG GCGCCGTGGG TTATAACCAG AGCCGTCAAC AAAATCGTGT TCGTCTTTTC GAGACCGGCT TACGCTTTGT ACCTGATACT ACTGCAGAAT CAAGTGTACG TCAGCAAGCG ATGTTGGGTG CGGTTATCTC AGGTAACCAA AAAGATGAAC ATTGGTCGAT GGAGTCTAAA ACGGTCGATT TCTTCGATCT TAAGGGCGAC CTCGAAGCCA TCATCGGCTT GACAGTTTCC GATGTTGAAT TTACTTTTAG AAGTGCAACA CATCCAGCTC TTCATCCGGG GCAATGTGCT GAAATATTAA GGAATGATCG AGTCATTGGT ATCATTGGTG CGGTACATCC AAGCTTAGAA AAGCCTTTTG GACTCAATGG TAAAACAATT GTTTTTGAGC TCGAATTGGA CGCTTTATTA CATGCCGGCT TACCGCTAGC CCAGACTGTA TCTAAGTTTC CTGCTAACCG TCGTGACATC GCCGTCGTAG TAGATGACAA TGTTTCTGCC GGAGATGTTG TAAAAATGAT AAGAAAAGTT GGCCAAAATC AGTTGGTTGG CTTAAACTTA TTCGATGTAT ACCAAGGTAA AGGTGTTGAG CCAGGTAAAA AGAGCCTAGC CATCGCACTT ACATTACAAG ACAACACACG TACACTTGAA GAAAAAGAGA TAGCTGAGAT GGTAGATTCA GTGGTTTCCG CTCTCAAGTC AGAGTTCAAC GCACTGTTGA GGGATTAA
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Protein sequence | MKFSESWLRE WVNPSISREE LSHQITMAGL EVDGIEGVAG EFSGVIVGEV VECGQHPDAD KLRVTKINVG EDELIDIVCG APNCRLGIKV AVAMVGAVLP GDFKIKKAKL RGEPSFGMLC SYGELGIDVE SDGILELPVD APIGADLRDY LSLNDAVIDV DLTANRADCL GMAGLAREVG VLNRQSVTEP TWEAVSPTID DAIKIDLQAP AFCARYLGRV VKNVNVKAES PLWMQEKLRR SGIRSIDPIV DITNYVLIEF GQPMHAFDLA QLAGDIQVRM GSGDEKLTLL DGKEITVPAD TLVISDQERP LALAGVFGGE YSGVNTDTQD IMLECAFFAP LAILGKARRL GLHTDSSHRF ERGVDPELQH KVMDRATRLV LDICGGEAGP VVEAKSEEHL PKPVEIVLRR SKLDRILGHH ISDAEVTEIL ERLGFDVTVN SDTWEVTTAT YRFDMAIEED LIEEVARIYG YNNIPNTAPV ASLSMPDHKE SDISLKRVRS MLVARGFQEA VTYSFVDPKL QNLVHPGEEA MILPNPISVE MSAMRLSMFT GLLGAVGYNQ SRQQNRVRLF ETGLRFVPDT TAESSVRQQA MLGAVISGNQ KDEHWSMESK TVDFFDLKGD LEAIIGLTVS DVEFTFRSAT HPALHPGQCA EILRNDRVIG IIGAVHPSLE KPFGLNGKTI VFELELDALL HAGLPLAQTV SKFPANRRDI AVVVDDNVSA GDVVKMIRKV GQNQLVGLNL FDVYQGKGVE PGKKSLAIAL TLQDNTRTLE EKEIAEMVDS VVSALKSEFN ALLRD
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