Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2544 |
Symbol | |
ID | 5609851 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3089601 |
End bp | 3090668 |
Gene Length | 1068 bp |
Protein Length | 355 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640933463 |
Product | imidazole glycerol-phosphate dehydratase/histidinol phosphatase |
Protein accession | YP_001474279 |
Protein GI | 157375679 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0131] Imidazoleglycerol-phosphate dehydratase [COG0241] Histidinol phosphatase and related phosphatases |
TIGRFAM ID | [TIGR01261] histidinol-phosphatase [TIGR01656] histidinol-phosphate phosphatase family domain [TIGR01662] HAD-superfamily hydrolase, subfamily IIIA |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGCAGA AAATATTATT TATCGACCGT GATGGCACCA TCATCGAAGA GCCTGTCACC GACAAGCAGG TGGATAGCCT GGCTAAGCTG GTTTTCGAAC CCACTGTGAT CCCCGCACTG CTGAAATTGC AAAATGCCGG TTATCGCCTG GTCATGGTGA GTAACCAAGA TGGTTTAGGC ACGCCCTCTT TTCCTAAGGA TGACTTCGAT GCCCCTCAGG ATATGATGAT GCAGATCCTA AGCAGCCAGG GCATTATCTT CGATGAAGTG CTTATCTGTC CTCACTTTAA CGATGAAAAC TGCAGTTGTC GCAAACCAAA ACTCGGGCTG GTCAAAGATT ACCTGACCCA GGGCAAGGTA GACTTCACTC AATCGGCCGT GATTGGCGAT CGCGAAACGG ACATGGGACT CGCCGATGCC ATGGGCATTC AGGGACTCCA ATACGACCCT GAGACCCTCA ACTGGAATGC CGTTACCGAT ATTCTATTGA ACCGCAACCG CAGCGCTACT GTGGTAAGAA CCACCAAAGA GACCGACATT CGAGTCACTA TCGATCTCGA CTCACAAGAG AAAGGCAAGA TAGTCACCGG CATCGGCTTC TTCGACCACA TGCTGGATCA AATCTCGACT CACGGTAACT TCAAGATGGA CGTTAAGGTC GACGGCGATC TCGAGATCGA CGATCATCAC AGCGTCGAAG ATACGGCGCT GGCAATTGGC GAAGCAATCA GAGAAGCCCT TGGTGATAAA CGCGGTATCG CACGCTTTGG TTTCAGCATT CCCATGGATG AAGCGAGCGC CGAGTGTCTG CTCGACCTGT CGGGTCGCCC CTTCATCAAG TTTGATGGCG AATTTGAACG CGAACTGGTA GGTGAGATGG CCACCGAGAT GGTGCCGCAC TTCTTCCGCT CCTTCGCCGA CGGCCTACGC TGCACCTTGC ACCTCAAAAC CTTGGGCGAT AACGATCACC ACAAGGTTGA AAGCCTCTAT AAAGTCTTAG GCCGCACCCT GCGTCAGGCT GTTAAGGTTG AGGGTGACCT GCTCCCCTCG AGTAAAGGTG TCTTATGA
|
Protein sequence | MKQKILFIDR DGTIIEEPVT DKQVDSLAKL VFEPTVIPAL LKLQNAGYRL VMVSNQDGLG TPSFPKDDFD APQDMMMQIL SSQGIIFDEV LICPHFNDEN CSCRKPKLGL VKDYLTQGKV DFTQSAVIGD RETDMGLADA MGIQGLQYDP ETLNWNAVTD ILLNRNRSAT VVRTTKETDI RVTIDLDSQE KGKIVTGIGF FDHMLDQIST HGNFKMDVKV DGDLEIDDHH SVEDTALAIG EAIREALGDK RGIARFGFSI PMDEASAECL LDLSGRPFIK FDGEFERELV GEMATEMVPH FFRSFADGLR CTLHLKTLGD NDHHKVESLY KVLGRTLRQA VKVEGDLLPS SKGVL
|
| |