| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2542 |
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| Symbol | hisD |
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| ID | 5612964 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3087132 |
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| End bp | 3088451 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640933461 |
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| Product | histidinol dehydrogenase |
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| Protein accession | YP_001474277 |
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| Protein GI | 157375677 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0141] Histidinol dehydrogenase |
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| TIGRFAM ID | [TIGR00069] histidinol dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.348533 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGATCC TCAATTGGGC ATCATTAACC GACACCGACC GTAAGGCGGC ACTCTCTCGC
TCCCCCCTGG TTGGTGACGC GAGTCTGGAG CAAGATGTAC TCGCTATCGT CAATGAAGTA
CAGATAGGCA AAGATGCGGC GCTAAAAGAT TACAGCCGCA AGTTTGATGG CGTCACGGTC
GAACAGTTGA AGCTGTCTGA GGGTGATATC GATGCAGCCT GTGCCCGAGT CGATGAGGAG
ATAAAACTCG CCGTGAGTCA GGCGATAACC AATATCGATA CCTTTCACCA GGCACAGAAG
TTTGAACCTG TGAATATCGA GACTCAAAAA GGGATCCGTT GTGAACTGCG CTCAGAGCCT
ATCGAAAAAG TCGGCTTATA CATTCCCGGT GGCAGTGCAC CGCTGATATC CACCGTACTC
ATGTTAGCCT TGCCAGCCAA GATTGCCGGT TGTGAGCAAA GAGTGCTGGT CAGCCCGCCC
CCCATAAACG ATGCCATCGT CTATGCCGCT AACGCCTGTG GGATAACAGA GATATTACAG
GTCGGCGGCG CGCAGGCCAT CGCAGCCCTC GCCTTCGGCA CCGAGTCGGT TCCCGCCGTC
GATAAGATTT TTGGTCCCGG CAACCGTTAC GTCACCGAAG CTAAACGTAT CGTCTCTCAA
GACAGTCGCT GCGTGGTGAG CATAGATATG CCTGCGGGCC CATCTGAAGT GCTATTGATT
GCCGATAGCG ATGCCAATGC CGAGTTTATT GCGGCCGATC TCCTGTCTCA GGCCGAACAC
GGCCCGGATT CTCAGGTGAT GCTGGTCACA GACTGCTCTG CGCTGGCAGA TGAGGTGAAT
CTGGCACTCG CTCGTCAACT TGAACTCCTG CCCAGAGTTG ATATTGCCGA GGTAGCCCTT
GAGTCCAGCC GCACGCTGCT GGTCGAAAAT ATGGAGCAAG CCGCTCAGGT ATCAAACCTC
TATGGGCCTG AGCACCTTAT TATACAAACC CAAAATCCCC GTGAAGTTCT GAAGCAGATC
CGCGCCGCAG GCTCAGTCTT CTTAGGGGCT TATACACCAG AATCGGTGGG TGATTACGCC
AGTGGCACTA ACCACGTGCT GCCGACCTAT GGGTATAGCC GCGCGGTATC CAGCCTCTCT
CTGGCCGATT TTAGCCGCCG CTTCACCGTG CAGGAGCTTA GCGCCGAGGG ATTAATAGGA
CTCAGCCAAA CGGTTATGAC GCTCGCCGCG GCCGAGCAGC TCGATGCTCA CAAAAACGCG
GTCGCCATTC GCATTGCCAG CCTACAGTCA GATGTAGCCG CTCAAGCTAA AGGAGTTTGA
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| Protein sequence | MQILNWASLT DTDRKAALSR SPLVGDASLE QDVLAIVNEV QIGKDAALKD YSRKFDGVTV
EQLKLSEGDI DAACARVDEE IKLAVSQAIT NIDTFHQAQK FEPVNIETQK GIRCELRSEP
IEKVGLYIPG GSAPLISTVL MLALPAKIAG CEQRVLVSPP PINDAIVYAA NACGITEILQ
VGGAQAIAAL AFGTESVPAV DKIFGPGNRY VTEAKRIVSQ DSRCVVSIDM PAGPSEVLLI
ADSDANAEFI AADLLSQAEH GPDSQVMLVT DCSALADEVN LALARQLELL PRVDIAEVAL
ESSRTLLVEN MEQAAQVSNL YGPEHLIIQT QNPREVLKQI RAAGSVFLGA YTPESVGDYA
SGTNHVLPTY GYSRAVSSLS LADFSRRFTV QELSAEGLIG LSQTVMTLAA AEQLDAHKNA
VAIRIASLQS DVAAQAKGV
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