Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2522 |
Symbol | |
ID | 5609616 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3065729 |
End bp | 3066838 |
Gene Length | 1110 bp |
Protein Length | 369 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640933441 |
Product | ribonuclease D |
Protein accession | YP_001474257 |
Protein GI | 157375657 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000280385 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTTAGCGT TTCAATATAT AGATGACGAT GCGAGCTTAA CTGAGCTTGT ATCGCAATAT CGTCAGAGTA CTTTACTGGT CTTGGATACT GAGTTCGTAC GAACACGTAC CTATTATGCC CGACTTGGTT TGATACAGGC TTACGATGGT AAAACGTTAG CATTGATTGA CCCGATTGCC GTTGGCAACC TGTCAGAGTT TTGGAGCCTG CTCACGGAGC CCGAAATTAC CACGGTATTG CACTCTTGCA GTGAAGATCT TGAGGTGTTC GCCCGTAATG GACAGTGTCA GCCCATTCGT CTGTTTGATA GTCAGATCGC AGCATCGCTG TGTGGTTTCG GTCATGGACT GGGCTATGCC AAACTGGTCG AACAGACACT GAATATCGCG CTCGATAAGG GGGAGTCCCG CACCGACTGG ATGAAGCGTC CATTAAGTAA AGCTCAACTG ACTTACGCGG CCAACGATGT CTATTACCTC TATGAGCTCT ATCCTCAACT GATTCAAAAG TTAGAAGATA CAGATAGACT GGATTGGGTA TTCGAGGAAG GCGAACGGAT GACGCAAGGG CGGCTAACTC CGCCAGATCT TGAGCTGGCA TATCTGAAAG TTAAGAATGC CTTTCAGTTG AGTTCTCAGC AGTTAGCTTA CCTTAAGGTT TTGGCTAAAT GGCGATTAAA GAAGGCGCTA TCACGGGATC TTGCCGTTGG ATTTGTGGTG AAAGATCATG CCTTGATTGG CCTTGCTAAA AAACAGCCGA AGAATACGAA TGAGCTGAAT AAGATGATCG AGCTGACGGA TCAGGAGAAA CGCATACATG GTAGAGATCT GTTAGCCCTG CTCGATACTG CCGATCTTGA TAATCCGCCT AAGTCGATCG ACGTGTTGGC GTTGAAGAAT GGTTATAAAT CATCATTTAA GACTATCAAG AATTGTCTGA CAGCACTGTC TGAAAAGCAT GATGTTCCGA TTGAGTTGCT TGGTTCGAAG CGACATATTC ATGAATATCT GCAATGGTTC TGGGACGGTA AAATCGGCGA TGCTCCGCTG TTGTTAAGCG GTTGGCGCGG TGAAATTGCC GCATCACCAC TGGCCGAATT GGCTTTGTAA
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Protein sequence | MLAFQYIDDD ASLTELVSQY RQSTLLVLDT EFVRTRTYYA RLGLIQAYDG KTLALIDPIA VGNLSEFWSL LTEPEITTVL HSCSEDLEVF ARNGQCQPIR LFDSQIAASL CGFGHGLGYA KLVEQTLNIA LDKGESRTDW MKRPLSKAQL TYAANDVYYL YELYPQLIQK LEDTDRLDWV FEEGERMTQG RLTPPDLELA YLKVKNAFQL SSQQLAYLKV LAKWRLKKAL SRDLAVGFVV KDHALIGLAK KQPKNTNELN KMIELTDQEK RIHGRDLLAL LDTADLDNPP KSIDVLALKN GYKSSFKTIK NCLTALSEKH DVPIELLGSK RHIHEYLQWF WDGKIGDAPL LLSGWRGEIA ASPLAELAL
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