| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2522 |
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| Symbol | |
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| ID | 5609616 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3065729 |
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| End bp | 3066838 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933441 |
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| Product | ribonuclease D |
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| Protein accession | YP_001474257 |
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| Protein GI | 157375657 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0349] Ribonuclease D |
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| TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000280385 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTTAGCGT TTCAATATAT AGATGACGAT GCGAGCTTAA CTGAGCTTGT ATCGCAATAT
CGTCAGAGTA CTTTACTGGT CTTGGATACT GAGTTCGTAC GAACACGTAC CTATTATGCC
CGACTTGGTT TGATACAGGC TTACGATGGT AAAACGTTAG CATTGATTGA CCCGATTGCC
GTTGGCAACC TGTCAGAGTT TTGGAGCCTG CTCACGGAGC CCGAAATTAC CACGGTATTG
CACTCTTGCA GTGAAGATCT TGAGGTGTTC GCCCGTAATG GACAGTGTCA GCCCATTCGT
CTGTTTGATA GTCAGATCGC AGCATCGCTG TGTGGTTTCG GTCATGGACT GGGCTATGCC
AAACTGGTCG AACAGACACT GAATATCGCG CTCGATAAGG GGGAGTCCCG CACCGACTGG
ATGAAGCGTC CATTAAGTAA AGCTCAACTG ACTTACGCGG CCAACGATGT CTATTACCTC
TATGAGCTCT ATCCTCAACT GATTCAAAAG TTAGAAGATA CAGATAGACT GGATTGGGTA
TTCGAGGAAG GCGAACGGAT GACGCAAGGG CGGCTAACTC CGCCAGATCT TGAGCTGGCA
TATCTGAAAG TTAAGAATGC CTTTCAGTTG AGTTCTCAGC AGTTAGCTTA CCTTAAGGTT
TTGGCTAAAT GGCGATTAAA GAAGGCGCTA TCACGGGATC TTGCCGTTGG ATTTGTGGTG
AAAGATCATG CCTTGATTGG CCTTGCTAAA AAACAGCCGA AGAATACGAA TGAGCTGAAT
AAGATGATCG AGCTGACGGA TCAGGAGAAA CGCATACATG GTAGAGATCT GTTAGCCCTG
CTCGATACTG CCGATCTTGA TAATCCGCCT AAGTCGATCG ACGTGTTGGC GTTGAAGAAT
GGTTATAAAT CATCATTTAA GACTATCAAG AATTGTCTGA CAGCACTGTC TGAAAAGCAT
GATGTTCCGA TTGAGTTGCT TGGTTCGAAG CGACATATTC ATGAATATCT GCAATGGTTC
TGGGACGGTA AAATCGGCGA TGCTCCGCTG TTGTTAAGCG GTTGGCGCGG TGAAATTGCC
GCATCACCAC TGGCCGAATT GGCTTTGTAA
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| Protein sequence | MLAFQYIDDD ASLTELVSQY RQSTLLVLDT EFVRTRTYYA RLGLIQAYDG KTLALIDPIA
VGNLSEFWSL LTEPEITTVL HSCSEDLEVF ARNGQCQPIR LFDSQIAASL CGFGHGLGYA
KLVEQTLNIA LDKGESRTDW MKRPLSKAQL TYAANDVYYL YELYPQLIQK LEDTDRLDWV
FEEGERMTQG RLTPPDLELA YLKVKNAFQL SSQQLAYLKV LAKWRLKKAL SRDLAVGFVV
KDHALIGLAK KQPKNTNELN KMIELTDQEK RIHGRDLLAL LDTADLDNPP KSIDVLALKN
GYKSSFKTIK NCLTALSEKH DVPIELLGSK RHIHEYLQWF WDGKIGDAPL LLSGWRGEIA
ASPLAELAL
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