Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2496 |
Symbol | |
ID | 5611351 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3037161 |
End bp | 3038396 |
Gene Length | 1236 bp |
Protein Length | 411 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640933417 |
Product | cystathionine beta-lyase |
Protein accession | YP_001474233 |
Protein GI | 157375633 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
TIGRFAM ID | [TIGR01324] cystathionine beta-lyase, bacterial |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.654385 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.454177 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTTAAGAT GGCTAAACAA CAATTCAATC CTCTTCGGTT GTGGACAGTA CCTTATGAAA AAAGAGACAC AGATAATCAG TACCGGTCGA GATAAAAAAT GGACCAAAGG CGTCATTAAT CCTCCTGTAT TTCGAGCTTC GACCATGGTT TTCGACACTA TGGATGAGAT GCGTTTCGCC ATCAAGAACC GGGCCAATGG AGAGATGTTC TATGGCAGAC GCGGCGGGCC GACCCACTTT GCTTTTCAGG CCGCCATCGC CGAACTTGAG GGTGGTGTAG GGACCGCACT ATATCCGTCG GGATCGGCCG CCATCAGCGG TGCCCTGCTC TCATTTTTAA AAGCCGGCGA TCACCTGCTA ATGGTCGATA GCGCCTATGA ACCCACCCGG GATCTGTGCA ATAAATTGCT TGCGGGGTTC GGTATCGAGA CCACCTACTA CGATCCTATG ATTGGTGCCG GCATTAGCGA ACTCATCAGG CCAAACACTA AGGTGTTGTT TCTCGAATCT CCAGGCTCCA TCACCATGGA AGTTCAGGAT GTACCCACAC TGAGTGAAAT TGCTCACAAG CACGATATCG TCGTCATGCT GGATAACACC TGGGCTTCCC CCATTAACTC GCGACCCTTC GACATGGGCG TCGATATCTC AATTCAGGCC GCCACTAAAT ATATTGTCGG ACATTCGGAT GTCATGATGG GTACCGCGAC ATCCAATGAA GCTCACTGGG ATCAACTGAG AGAAAATAGT TACCTGATGG GGCAATGCAC CTCACCCGAT GATGTCTACC TGGCTAATCG GGGTCTGAGA ACATTAGGTG TGCGTATGCA GCAACATGAG CAGAATGCGC TTAAAGTTGC CAACTGGTTA GCCACTCGTC CCGAGGTCGA TCATATAAGG CATCCGGCAT TCGACACCTG TCCCGGCCAT CAGTTTTTTA AACGCGATTT CAGCGCCTCG AATGGCCTGT TCTCCTTTGT GCTCAAAGAG GGCGACCTGA ACTCAGTCAC TGCACTGGTC GAAAATATGC ACCACTTCAA GATGGGCTTC TCCTGGGGTG GATTTGAGAG CCTGATCTTA GGGGTATTTG GCATCGATAA GTTAAGAACC GCCACCAAAT GGGATAGCAG TAAACCTCTG ATACGTCTGC ATATCGGGCT GGAAAACCCC GACGATCTTA TTGCCGATCT GGAAGCAGGA TTCGAGCGGT TCAATGCCGC TCTCAATAAG CGATAG
|
Protein sequence | MLRWLNNNSI LFGCGQYLMK KETQIISTGR DKKWTKGVIN PPVFRASTMV FDTMDEMRFA IKNRANGEMF YGRRGGPTHF AFQAAIAELE GGVGTALYPS GSAAISGALL SFLKAGDHLL MVDSAYEPTR DLCNKLLAGF GIETTYYDPM IGAGISELIR PNTKVLFLES PGSITMEVQD VPTLSEIAHK HDIVVMLDNT WASPINSRPF DMGVDISIQA ATKYIVGHSD VMMGTATSNE AHWDQLRENS YLMGQCTSPD DVYLANRGLR TLGVRMQQHE QNALKVANWL ATRPEVDHIR HPAFDTCPGH QFFKRDFSAS NGLFSFVLKE GDLNSVTALV ENMHHFKMGF SWGGFESLIL GVFGIDKLRT ATKWDSSKPL IRLHIGLENP DDLIADLEAG FERFNAALNK R
|
| |