Gene Ssed_2486 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2486 
Symbol 
ID5610029 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3024480 
End bp3024764 
Gene Length285 bp 
Protein Length94 aa 
Translation table11 
GC content39% 
IMG OID640933407 
ProductYebG family protein 
Protein accessionYP_001474223 
Protein GI157375623 
COG category[S] Function unknown 
COG ID[COG3141] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000469742 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.320034 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGTTA TTACTAAATT TGTTGTGGTC AGAGAAGGGG TTGAGAAGAT GACATTTACA 
TCTAAGAAGG AGGCGGATGC CTACGATAAG ATGCTTGATA TCGCGGATCA ACTCACTCCT
TTCTTGACCG AGTCCGAGCT TGAGATAGAT GAAAATACTT GTGAAAAGTT AAGTTTCTAT
CTGGCACAAC ATAAAGAGCA ACTAATGAGT TTATTGAAAG GTGTTGCGCC TAAAAAAGAA
CCTTCGCCTA AAAAAACGGC TAATAAAGCC GAATCGAAAA AATAA
 
Protein sequence
MAVITKFVVV REGVEKMTFT SKKEADAYDK MLDIADQLTP FLTESELEID ENTCEKLSFY 
LAQHKEQLMS LLKGVAPKKE PSPKKTANKA ESKK