Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2479 |
Symbol | |
ID | 5610478 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3014191 |
End bp | 3015555 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640933400 |
Product | hypothetical protein |
Protein accession | YP_001474216 |
Protein GI | 157375616 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00147057 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0236321 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAAAC TTGGGATATT GTCGGCGTCT GTGATGCTAG CACTCAGTGC GCCAGCCGCA TTGGCTAAAG TTACAGATGC TGAAGCTGCA AAGCTTGGAA CCGAATTAAC GCCATTAGGT GGTGTTAAAG CCGGTAATGC CGATGGTTCG ATTCCTGCCT GGGATGGTGG GATCACTTCC GCCATTGCAG GTTATGAGAA GGGGATGCAT CATCCGGATC CTTTTCCTCA GGACAAGATT GAATTTACGA TAACTAATGC CAATAAAGAT AAATACAAGG CTCATCTGAC CGATGGCCAG AGGAAGTTAT TTGAACTTTA CCCTGACACC TACAAGATGA ATGTCTATCA GACCAGGCGT ACCGCTTCTG TGCCTCAGTT TGTCTATGAT GCGACTAAAG CCAATGCGAC CCGCGCCGAA CTTGTATCTG AAGGTAACGG CGTTAAAGGT GCATCGATTG GTGTGCCATT CCCTATGCCT AAAAATGGTT TAGAGGTTAT CTGGAACCAT GTACTGCGTT TTCGTGGGGT GGATGTAGAA ACTTCCCGTA GCCAAGCCGC GCCGACGGCG AGTGGTAGCT ATACCTTAGT TGAAACCGCC GAGGAGATAC GTTTTCAGTA TTCTCGTCCG GAGATCACCT TAGATAAACT CAATGCGTCA AATACCTTGT TCTACTTTAA GCAGGTCGTG ACACAACCGG CGCGTCTTGC GGGTACTGCA CTACTGGTTA AAGAGACCAT GGATCAAGAG GCATTACCTC GCCAGGCGTG GACCTACAAT ACAGGTCAAC GCCGTGTTCG TAAGGCCCCT AATGTGGCCT TCGATACACC GGGTTCTGTA TCTGACGGTC TTAGAACGAC GGATGACTTT GACATGTTTA ACGGCTCTCC TGTTCGTTAT AACTGGGAGT TGATCGGTAA GCAGGAAGTC TACATTCCCT ATAATGATTA CAAGCTACAT TCGGATAAGC TTAAGTATGA CCAGATTATT CATCCCGGTC ATGTGAATCC TGAGCTTGTG CGTTGGGAAA AGCACCGTGT TTGGGTTGTC AAAGCTCAGC TTAAAGAGGG CATGCGTCAT ATTTATAAGA CGCGTACTTT CTATATAGAT GAGGACTCCT GGCAGGTGTC GCTAGCCGAT ATCTATGATA ATCGTGATGA GTTATATCGT GTTGCCTTTG CGCATGCTAT TAACTATTAC GAAGTTCCTA CACATTGGAC TACGCTTGAG GTCTTCCATG ATCTTCAATC CCGTCGTTAT ATCGCAATGG GACTCGATAA CGAAGGCCGT ATGTATAATT TTGATGCCAA GCTGAGTGAA GCTAACTTCA CCCCCGCGGC GTTAAGACGT GCCGGTATTC GTTAA
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Protein sequence | MNKLGILSAS VMLALSAPAA LAKVTDAEAA KLGTELTPLG GVKAGNADGS IPAWDGGITS AIAGYEKGMH HPDPFPQDKI EFTITNANKD KYKAHLTDGQ RKLFELYPDT YKMNVYQTRR TASVPQFVYD ATKANATRAE LVSEGNGVKG ASIGVPFPMP KNGLEVIWNH VLRFRGVDVE TSRSQAAPTA SGSYTLVETA EEIRFQYSRP EITLDKLNAS NTLFYFKQVV TQPARLAGTA LLVKETMDQE ALPRQAWTYN TGQRRVRKAP NVAFDTPGSV SDGLRTTDDF DMFNGSPVRY NWELIGKQEV YIPYNDYKLH SDKLKYDQII HPGHVNPELV RWEKHRVWVV KAQLKEGMRH IYKTRTFYID EDSWQVSLAD IYDNRDELYR VAFAHAINYY EVPTHWTTLE VFHDLQSRRY IAMGLDNEGR MYNFDAKLSE ANFTPAALRR AGIR
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