| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2471 |
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| Symbol | |
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| ID | 5610077 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2998177 |
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| End bp | 3000093 |
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| Gene Length | 1917 bp |
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| Protein Length | 638 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933387 |
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| Product | ABC transporter ATPase component |
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| Protein accession | YP_001474208 |
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| Protein GI | 157375608 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0490995 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0499107 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGTCTAG TTCGTATTAA TAGTGGTTCA TTAGCCTATG GCTACACACC ATTATTGCAA
AAAGCCGATT TTACTATCGA ACCCGGCGAG CGAGTGTGTA TCGTTGGTCG TAACGGTGCG
GGCAAGTCGA GTCTGATGAA AGTACTCAGT GGTGATGTGC TTCTCGATGA TGGCGAATTT
AATATTGCAA CCGATGTTAA AGTGAGTCGT CTACAGCAAG ATCCCCCTAA AGCCGAGAAG
GGATCAGTTT ATTCATACAT TTCAGCGGGA CTTCAGGAAG TCGGTGAGAA ACTAGAACGA
TATCATCAGC TTTCACATGA CGTTGCCACG GCAACGCCAG AGCAGATGGA TCGAATGCTT
AAGCAGATGG AACGCTTGCA AGAAGATATC GATCACCTGA ATGGCTGGCA GTTAGATAAT
CGTATCAACC AAAATTGTGC TCTGCTTGGT TTAGATCCTG ATGGTGCCTT GAATGAGCTT
TCTGGTGGAT GGCAGCGCAA AGTGGCGTTA GCACGTTCAC TGGTCAGTGA TCCCGATCTA
CTGTTGCTGG ATGAGCCGAC AAACCATCTG GATATCGATA CGATCGAGTG GCTTGAACAA
TTTTTGTTAA GTTATAAAGG TGCTATCGTG TTTGTGAGTC ATGACCGAGG CTTCATTCAA
CGTATGGCGA CTCGAATTGT CGATCTGGAT CGTGGCGTGG TGACCTCTTG GCCTGGGAAC
TATCAGACTT ATCTGGATGG TAAAGCTGAG TGGTTAAGAG TTGAAGCCGA GCAAAATGCT
CATTTCGATA AGAAGTTGGC TGAAGAAGAA TCTTGGATAA GACAAGGTGT TAAAGCTCGT
CGAACACGTA ATGAAGGGCG GGTACGCGCC CTTAAAGCAC TGCGAGTAGA GCGTATGGCA
CGACTTAATC GCCAAGGTGG CGCTAAGATG GCTGTTGCGG ATACCGATCG CTCTGGTAAG
TTAGTATTCG ATATTGAAAA CCTAAACTAC AATCTTCCAG ATAAGAATCT GGTCAAGAAT
TTCACGACCT CAGTCATGCG TGGTGACCGA ATAGCGCTGA TTGGGCCTAA TGGCTGTGGT
AAATCTACAT TAGTGAAACT ACTGATTGGC CAGTTAGAAG CTCAGTCGGG TAGTGTCAAA
GTTGGTACCA AACTCGAAAT TGCCTATTTC GATCAGTACC GTGAAGCACT CGATCCAGAA
AAGACAGTGG AAGAAAATGT CGGGGAAGGT AAGAAGACCA TCACTATTAA TGGTCAAGAC
CGTCACATTC TGAGCTATCT GCAGGATTTC CTATTTTCAC CAATGAGAGC AAGGACACCG
GTTAAAGCAC TCTCAGGCGG TGAAAAGAAC AGATTACTGT TAGCGCGTCT ACTGTTAAGA
CCTGCCAATT TAATTATTCT CGATGAGCCG ACGAACGACC TTGATATCGA AACCTTAGAG
TTGTTAGAGT CACTACTGAC TGAATATCCT GGCACCTTAC TTATCGTCAG TCATGATCGA
GCCTTTATCG ATAATACTGT GACCAGTAGT TGGTGGTTCA CAGGTAACGG TGGCTGGGCC
GAGTATGTTG GTGGTTATCA AGATGCCGTC TCTCAAGGAG CAAAGTTTTA TTCTGCGGAA
CCTCAAGAGA CAAAGAGTGT CCAACCTGTC GAGGTTGAGG TAAAAGAGGT TAAAACCCCA
GTAGCTAAAG CTGAAAAGAA GCTGTCGTAT AAGTTACAGC GTGAGCTCGA AGCGCTGCCA
GCCACTATGG AGCAGTTAGA GCAAGAAGTT GAAGCTTTAC AGGAAAAGAT TAGTGCGCCA
GAGTTTTATG CTCAGGAACA AGAGAAAATT AGCCTTCAAC TCGAGCTGCT AGCTAATAAA
GAGCAGGAGT TGGAAGTTTG CTTTGAGCGA TGGGAAGAAC TTGAGTCGCT CAAGTAA
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| Protein sequence | MSLVRINSGS LAYGYTPLLQ KADFTIEPGE RVCIVGRNGA GKSSLMKVLS GDVLLDDGEF
NIATDVKVSR LQQDPPKAEK GSVYSYISAG LQEVGEKLER YHQLSHDVAT ATPEQMDRML
KQMERLQEDI DHLNGWQLDN RINQNCALLG LDPDGALNEL SGGWQRKVAL ARSLVSDPDL
LLLDEPTNHL DIDTIEWLEQ FLLSYKGAIV FVSHDRGFIQ RMATRIVDLD RGVVTSWPGN
YQTYLDGKAE WLRVEAEQNA HFDKKLAEEE SWIRQGVKAR RTRNEGRVRA LKALRVERMA
RLNRQGGAKM AVADTDRSGK LVFDIENLNY NLPDKNLVKN FTTSVMRGDR IALIGPNGCG
KSTLVKLLIG QLEAQSGSVK VGTKLEIAYF DQYREALDPE KTVEENVGEG KKTITINGQD
RHILSYLQDF LFSPMRARTP VKALSGGEKN RLLLARLLLR PANLIILDEP TNDLDIETLE
LLESLLTEYP GTLLIVSHDR AFIDNTVTSS WWFTGNGGWA EYVGGYQDAV SQGAKFYSAE
PQETKSVQPV EVEVKEVKTP VAKAEKKLSY KLQRELEALP ATMEQLEQEV EALQEKISAP
EFYAQEQEKI SLQLELLANK EQELEVCFER WEELESLK
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