Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2467 |
Symbol | |
ID | 5609651 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2993525 |
End bp | 2995267 |
Gene Length | 1743 bp |
Protein Length | 580 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640933383 |
Product | ATP-dependent protease |
Protein accession | YP_001474204 |
Protein GI | 157375604 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1067] Predicted ATP-dependent protease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00344984 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0156105 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTCAA ACGTCATCCC AGTTTCAGCA TTGTCACCCC ATCATAAAAT TCCAACTCTC TCTGAAATTA AACATAATGA ACAAGGTTTA TTATTAGGTC AGGAAAGAGT CATCGATGCA TTTGAGCTAC TGACAAGAAC ATCAAATCAG CATATGTACC TTGCTGATTT GCCGGGGATA GACAGGTGTG AATTCATCAA ATCACTCACA CTTAACTTGG GTGCTCAAGA AGACCAATAT TTGCATAAAG CAATAAACAA CAAGCAGTTA ACCTTTGATT GGAAAAACGA CGACTCAGCC GCTCTAGGGG ATATTTTCTC AACCAAAAAT CAATCCTATC AATACCTTTC CGGTAACATT AAACGCGCAG ATCTCATCGG GAGACTCGCT CAAAGCAATA TAGAAGCGGG TAATAATAAG ACTCAATATA TTCCCGGGGC GCTCGCACAA TGTCACTATC TATTTATCTG CGCCGAATCA CTCTGGAAAC GTGAAGGATT ATGGGATCTC CTTTTAGAAA TACTGACCCA TAGACAGTAC CATGTACATT CCACTCTCCC AGCTCTGCCT CTTAACTGTA AAATAGTACT TGTCGGCTCC AGTACACAAT TCAGTGTCTG CTGGGTTGAA GAGGCACTGT TTTCATTACA TTTCCCGTTA CTCGGAGAGA TGGTTAACGA ACTCGATCTA GGCAAACATT CTGAAGCCGA TTATGTATGC TGGTTATTAG CCGTTGCTGC CGGTGTAGGT GCCACCCTGT CTCAATCCGC CCTTGTTCAA CTATTCTCAT ACAGTGCCCG ATTAGCCGAC CATCAGCAAA GGCTGTCACT ACTCTCGTCG CAAATTGGAC ACCTGTTAGC TCAGGCTAAA GCTTATTCCG GGCAAGAGGA GCTCACCGGT GAATCCATTA TTCATGCGTT GAAAAAACAT CAGAGCAGGC ATAATGCATC TGAAATGTTA TCGGCTCAAA ATTTTGACGA TAAATTTATT AACTTACCCA CAGATAAGTT TATGGTCGGT CAAATAAACG GCCTCACTGT ACTGGAGACC GTCGAGTACA GTTATGGTGA GCCGGCAAGG ATCACAGCTT CTGTCCATTA TGGTGATGGT GAGGTTGCCG ATATCGAAAG AAAATCTGAG CTAGGTGGCA ATATTCATGC GAAGGGTATG ATGATCCTCT CCTCTTGTCT CTACAGGATC TTCGGTAAAG ATGCACCTCT GCACTTGAAT GCAAACATCG TCTTTGAGCA ATCATATCAA GAGATCGATG GTGACAGTGC TTCGCTTGCC GAGTATTGCT GCCTGATTTC AGCTATTACT GAAAAACCCA TCGATCAAGG TATTGCTGTA ACCGGAGCAC TCGATCAATT TGGAAGTGTG CAAGCCATCG GTGGCGTTAA TGAGAAAATT GAGGGCTTCT TTAATCTATG TTCACGTCGT GGCTTAACCG GTACCCAAGG TGTCATCATC CCAAAATCGA ATACTCAACA ACTTAACCTT AGCCCACAGT TGATAGAAGC CATTACATCG GGTGAGTTTC ACCTGTATGG AATTGAACAT ATTGATGAAG CAGTTGAACA ACTAATGAAT ATCAGCGCGG GTATTGCAGA TAAAGATAAT AACTTCCCGG AAGATTCTCT ATATGGATTA GTTCAGGGCC GTCTCGCCGG ATTAGCGGGT TATCAGGATG AAGAGAAAAG TTTTTTTGCG AAGTTAGTCG AAAAATTCAG CTTTTCCAGC TGA
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Protein sequence | MNSNVIPVSA LSPHHKIPTL SEIKHNEQGL LLGQERVIDA FELLTRTSNQ HMYLADLPGI DRCEFIKSLT LNLGAQEDQY LHKAINNKQL TFDWKNDDSA ALGDIFSTKN QSYQYLSGNI KRADLIGRLA QSNIEAGNNK TQYIPGALAQ CHYLFICAES LWKREGLWDL LLEILTHRQY HVHSTLPALP LNCKIVLVGS STQFSVCWVE EALFSLHFPL LGEMVNELDL GKHSEADYVC WLLAVAAGVG ATLSQSALVQ LFSYSARLAD HQQRLSLLSS QIGHLLAQAK AYSGQEELTG ESIIHALKKH QSRHNASEML SAQNFDDKFI NLPTDKFMVG QINGLTVLET VEYSYGEPAR ITASVHYGDG EVADIERKSE LGGNIHAKGM MILSSCLYRI FGKDAPLHLN ANIVFEQSYQ EIDGDSASLA EYCCLISAIT EKPIDQGIAV TGALDQFGSV QAIGGVNEKI EGFFNLCSRR GLTGTQGVII PKSNTQQLNL SPQLIEAITS GEFHLYGIEH IDEAVEQLMN ISAGIADKDN NFPEDSLYGL VQGRLAGLAG YQDEEKSFFA KLVEKFSFSS
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