Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2455 |
Symbol | |
ID | 5609618 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2980685 |
End bp | 2981329 |
Gene Length | 645 bp |
Protein Length | 214 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640933369 |
Product | response regulator |
Protein accession | YP_001474192 |
Protein GI | 157375592 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.140183 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.431169 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGATTTCAG TATATTTGGT TGATGATCAT GAGTTAGTTC GAACGGGGAT CCGTCGTATC CTTGAAGATG AACGTGGAAT AAAAGTGACG GGGGAAGCGG GGGATGGTGA AACTGCTGTT CACTGGAGCC GTAGTAACGA AGCCGATGTT ATCTTGATGG ACATGAATAT GCCCGGTATC GGCGGTCTGG AAGCCACTCG AAAAATACTT CGTTATCAAC CTCATGCTAA AATTATTGTG TTGACTATCC ATACCGAAGA TCCGTTTCCT ACAAAAGTGA TGCAAGCTGG AGCATCTGGC TACCTTACAA AGGGAGCGAC GCCTCCGGAA GTGCTTCAAG CTATTCGACA AGTTGCACAC GGCCAAAGGT ACCTTTCACC TGAGATTGCG CAACAGATGG CGTTAAGCCA GTTTAATCAA ACGGAAGAGA ATCCTTTTAA AACACTTTCG GAGCGAGAGT TGCAGATCAT GATGATGATC ACCAGCGGTG AGAAGGTCAA TGATATCTCC GAGCAGCTTA ATTTAAGTCC CAAGACAGTG AATAGCTACC GATATAGGTT GTTTGCAAAA CTTGGTATCA GTGGGGATGT AGAACTGACT CGACTGGCCA TTCGTTATAA AATGTTGGAT ACCGGTCAGT TTTAG
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Protein sequence | MISVYLVDDH ELVRTGIRRI LEDERGIKVT GEAGDGETAV HWSRSNEADV ILMDMNMPGI GGLEATRKIL RYQPHAKIIV LTIHTEDPFP TKVMQAGASG YLTKGATPPE VLQAIRQVAH GQRYLSPEIA QQMALSQFNQ TEENPFKTLS ERELQIMMMI TSGEKVNDIS EQLNLSPKTV NSYRYRLFAK LGISGDVELT RLAIRYKMLD TGQF
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