| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2437 |
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| Symbol | |
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| ID | 5609660 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2959064 |
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| End bp | 2960524 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933348 |
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| Product | peptidase M48, Ste24p |
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| Protein accession | YP_001474174 |
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| Protein GI | 157375574 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00870552 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGAGTAAAA TTACTTCGCC AAAATCTCTT CTCGCAGGTG CATTGTCACT TATTTTTTGT
GCAACCGCGC CTTTGAGTCT AGCTAATAAC GACCTCCCTG ATCTTGGAAC CGCCGCCGTT
AATACCTTTA GTCTCGAGAA AGAGACGGTA TATGGTGACG CCTACATGCG GGTTATCCGC
TCATCGGCTC CTATTCTCAA CGACCCTGTC CTGAGTCAAT ATCTCACGGA GCTAGGCAAC
AAGCTGGTTG CTCATGCCAC TGGTGTGAAA ACCCCCTTCT ACTTCTTCCT GTTAAGAAAT
GATGAGATCA ACGCGTTCGC TTTCTTCGGC GGCCATGTTG GCGTTCACAC AGGCTTATTT
CTCAATGCAG ACAACGAAAG TCAGATCGCA TCGGTATTAG GGCATGAAAT TACCCACGTA
ACTCAACGGC ATTTAGCCCG CTCATTAGAA GCACAAGAGA AAAGCTCAAC CGCAACCATG
GTAAGCATGT TAGGTGCTAT CTTATTGACT ATTGCATCGC CTCAGGCTGG CATGGCGGCG
TTAGCAACGA CACAAGCATT AGCGACACAA GCCAAGATAA ACTATACCCG CCTACACGAG
AAAGAAGCCG ACCGGATCGG GATGCAAATT TTAGTCGATG CGGGGTTTGA TCCAAATGGC
GCTGCTGACT TTTTTGCAAA GCTGGCCACC CGTTACCGTT TTACAACTAA GCCTCCGCAG
ATGCTGTTGA CCCACCCGCT TCCTGAATCC CGTATCACAG AGGCAAGAAA CCGAGCGACT
CAATACCCTC ACAGGTACGT ACCCGATAAC ATCGACTTTC AGCTGGCAAA GGCCCGTATT
CAGGTTAGAT TTTCAAGTTA CAGCGAAGAA GCGGCGTTGG CATTGTTTGA CACCCAACTA
AAAAAGCGTA GCTACACATT TAAAAATGCC GCTCTGTATG GAAAAGCCTT AGCACTGTTT
CGAGCCGAGC GTTTCGATGA GGCTGAAATC ATCATAGACA ATCTTCTAAA GGAAGATAGA
AATAATTTAT TCTACATAGA TACAAAGACA GATCTTCTGG TAGAAAGAAA AGCCAATGAT
GATGCGATTG CACTGCTTGA AACTCAGAGA AAACTAAAGC CCACTTCGCA AGTGGTCAAT
ACCAATCTGG CGAATGTTTA TATTGAATCG AACCAAGCGA CTAAAGCCAT TCCTCTGTTA
GAGGATATGA TTTTTCTGGA TAGACAAAAT CAGCTTCCCC TGTTTTTACT GAGAGATGCC
TATAAAAAGA CGGGAAATAA AGCGATGGAG CATTTCGTGA GTGCTGAATC AATGGCTTTG
GGCGCAGACT ATAAAGGGGC CATCGATCAA TTAAACTTTG CTTATAAGTT ATCAGCCGAT
AATCCTCTAC AACTGGCAAG AATTGAAGCC CGAATTCGTC AGTTTAAACA ATCAAATAGA
GCCTTAGAAG AGTTAAAATA A
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| Protein sequence | MSKITSPKSL LAGALSLIFC ATAPLSLANN DLPDLGTAAV NTFSLEKETV YGDAYMRVIR
SSAPILNDPV LSQYLTELGN KLVAHATGVK TPFYFFLLRN DEINAFAFFG GHVGVHTGLF
LNADNESQIA SVLGHEITHV TQRHLARSLE AQEKSSTATM VSMLGAILLT IASPQAGMAA
LATTQALATQ AKINYTRLHE KEADRIGMQI LVDAGFDPNG AADFFAKLAT RYRFTTKPPQ
MLLTHPLPES RITEARNRAT QYPHRYVPDN IDFQLAKARI QVRFSSYSEE AALALFDTQL
KKRSYTFKNA ALYGKALALF RAERFDEAEI IIDNLLKEDR NNLFYIDTKT DLLVERKAND
DAIALLETQR KLKPTSQVVN TNLANVYIES NQATKAIPLL EDMIFLDRQN QLPLFLLRDA
YKKTGNKAME HFVSAESMAL GADYKGAIDQ LNFAYKLSAD NPLQLARIEA RIRQFKQSNR
ALEELK
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