Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2432 |
Symbol | |
ID | 5614150 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2955045 |
End bp | 2955515 |
Gene Length | 471 bp |
Protein Length | 156 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640933343 |
Product | redoxin domain-containing protein |
Protein accession | YP_001474169 |
Protein GI | 157375569 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1225] Peroxiredoxin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.261051 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000101698 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAACACAT TGATAAAGGG CGACTCAGCC CCACTTTTCG AGCTAAAAAA CCAAGATGAT CAGCCCATCT CACTATCACA ATGCCTTGAG AGCGGCCCGG TACTCGTTTA TTTTTACCCG AAAGCATCGA CTCCAGGCTG TACTGTACAG GCCTGTGGGT TGAGAGACAG TAAAACTGCG CTCAATACGC TGAATGTAAC GGTATTAGGC ATTAGCCCTG ATCCTGTGCC TAAACTGAGC CGTTTTGCCG AGAAACAGGA ACTGAACTTT TCCCTGTTAA GCGATGAAGA CCATGCTATT GCAGATGCAT TCGGAGTATG GGGCGAGAAA AAGTTTATGG GAAAAATCTA TGACGGTATC CATAGATTAA GCTTCTTGAT CGGACAAGAT GGTAAAGTCA CTCATGTATT CAATAAGTTC AAAACGAAAG AGCACCACGA CGTAGTCCTT AATCATCTCA AAGATGCTTA A
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Protein sequence | MNTLIKGDSA PLFELKNQDD QPISLSQCLE SGPVLVYFYP KASTPGCTVQ ACGLRDSKTA LNTLNVTVLG ISPDPVPKLS RFAEKQELNF SLLSDEDHAI ADAFGVWGEK KFMGKIYDGI HRLSFLIGQD GKVTHVFNKF KTKEHHDVVL NHLKDA
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