| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2393 |
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| Symbol | |
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| ID | 5612579 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2913528 |
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| End bp | 2915981 |
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| Gene Length | 2454 bp |
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| Protein Length | 817 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933304 |
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| Product | signal transduction protein |
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| Protein accession | YP_001474130 |
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| Protein GI | 157375530 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.512634 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTTA AGACAAAGCT ACCTCTATTA TTGACATCAC TGGTTTGCAT CCCGCTCATC
TTGCTGGGGG CCATGGCTTT TGTTGAACTT AAGAGCGCTG CAGAGAAAAG CAGTGTTACT
CAGGTGACTA AGTACCTTGA ACAAGTTGTC GCTCAAACGG ATCGTCTAGT GAACACGGCA
CAAGCTAATG TAGAGTTAAT TGTGAATGAC TCCTTGTTAC ATAACTATGT GTTGACCGAA
AATGAGGATG AGCGCTATAC GCTGATGCAG CGTCCTTTGC TGCGGAAATT GAAAAGCATC
ATGAAGGTAT TTCCTCAATA CTACGAAATG CGGGTAATAC TCCCCGATGG TTACGAAGAT
CTCCGTTTAA CTTCTTATTT TATCGCGAAT CTTAAAGATG AAGAGGAGGC GAGTGAGCTA
TTTATCTCGA TGGGGCATGA TGAAAATAAT AATAAAACAC AGCTTCTTAC TAACCCGGAC
AATGACAAAT TTAGTCTGTA TGTGTCAAAA CGGGTAAACA TTATTAATAA GGCGGTGGAT
TCATTTAACG CCGATCCAAA GATGCGGGGC TACTTTGTCA TCACAGTTAG CCTGGATGCC
ATAAACGAAG TGCTTCTTGA CTCTCCCTGG AGTGGAGGGC GTTTTATTAT TACTGATCAA
TCGGGGGCCG CAGTTTTACC CTATTCTGCT AAGTCGGCAA CCGATATCAC CTCCGTTTAC
CAGGCTTTAA AACAAGATTC AGAGAGGCCA TCAAGCTTTA GCGTTCATGA ACTCGATGGT
GAAAGTTTTT ATCACACCAG CATGCCTCTG AAACAGGGGT TATGGTTACA TGCCTTGCTT
CCCGAGACCA TTTTGCTGCA ATACAGCAGA GATATGAGTT GGTTAGTGAC CATTATTACG
CTTTCTACGG TTGCATTTGC GATTCCTCTG TTGATCTTCC TGAGCCATTT CCAAATTATT
CGTCCGCTCA ATAAGTTGCA TCACGCATTT CTGCGTTTGG GTAATAATGT CGAATTGATT
CAGGTGAAAA CATCGGGTGA TGATGAACTT AATGAATTAG GCAAAGAGTT TAACCGGATG
AGTCTTAAGC TTTTTAAATC GAATGAGAAA ATCCGTGAAT TGGCATTTAA CGATCCTCTT
ACCGGATTAC CCAACCGGTT TATGTTTACC AAACATCTGA ACCTATCTTT GGAATCCGCC
AAATGCGATA GGGGACAACT TGCTGTCATG TTTATCGACC TGGATAACTT TAAACATATT
AATGACAGCC TAGGGCATCA GTCGGGTGAT CAACTTCTGC ATGAAATTGG TGACCGCTTG
CACCGCAATC TGCGTAGTAA AGATTTCTGT GAGCACTTCA GTGATAGCGA TATGGTGGCC
AGGCTTGGTG GAGATGAATT TACCGTCTTC CTTGGCGAAT TACCGTCGAT TAACATCGCC
GAGAAAGTCG CAAAACGGAT CCTGGAGATA ATATCTCAGC CTATCTTGCT TAGCGGTAAG
AGCTATTATA TCAGCGCCAG TATTGGTATT GCCTGTTATC CACAAAATGG AGTGACGACT
CAAGAGTTGA TAAAGAATGC TGATATCGCC ATGTATCATG CAAAGAAGAA GGGGAAAGGG
GGCTACCAGC ATTTTTCTGA TAACCTGAGC CGTCAAAATG ATGAGTTCTC TGTCATAGAG
CAAAAAATGC ATGAAGCGGT AGAAAATGAA CGATTTGAGC TGTATTTCCA ACCCATTGTA
GATAGCAATA CTCACCGTAT TGTCTCACTT GAAGCCCTTA TCCGTTGGTA TGACGTTGAG
TTTGGTTTCA TTCCACCGGA CAAGTTTATT CCCTTAGCCG AGAAAAATGG CTTAATCACG
GTAATAGGTG ACTGGGTCAT TCGTGAAGCA TGTCGTCAGC TAAAAATCTG GCAGGATAGT
GGAATCGTCG ATATTCAACT CGCTATCAAT GTCTCGGCGA TACAGCTGAA TAACCCCAAG
TTTGCCCAAG AGTTGTACCA AACTATAAAA AATAGCGGGA TAATTCCGGG TACTCTCTAT
ATCGAGCTAA CAGAGACAAC CATTATCAAT GGTGAGCAAG AGATCTTTGT GACATTAGAA
TGGCTTCGCA GTAAAGGGAT CAGGGTTGCC CTGGATGATT TCGGAACCGG CTACTCCTCC
TTGAGTTATT TGAGAAACCT TCCCATCGAC ATTTTAAAAA TTGATCAGAG TTTTATTCGT
GATATTAACG ATAAAAACAA CAATGTGATC TTATCCGCCG TTATCGTTAT GGCGCATGCG
CTTGGCTTTA AAGTGGTAGC CGAAGGGGTA GAGGAGAGAG GACATCTTGC CTTTTTGGTC
AAGGAGGGTT GCGATCTACT TCAAGGTTAC ATGTTTAGTC GACCACAAAC TGCAGATGAT
ATTACCAGAT TACTGCTTAA GGAAACCAAA GAAGAGGAAA GCAAAACGGG ATAG
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| Protein sequence | MKLKTKLPLL LTSLVCIPLI LLGAMAFVEL KSAAEKSSVT QVTKYLEQVV AQTDRLVNTA
QANVELIVND SLLHNYVLTE NEDERYTLMQ RPLLRKLKSI MKVFPQYYEM RVILPDGYED
LRLTSYFIAN LKDEEEASEL FISMGHDENN NKTQLLTNPD NDKFSLYVSK RVNIINKAVD
SFNADPKMRG YFVITVSLDA INEVLLDSPW SGGRFIITDQ SGAAVLPYSA KSATDITSVY
QALKQDSERP SSFSVHELDG ESFYHTSMPL KQGLWLHALL PETILLQYSR DMSWLVTIIT
LSTVAFAIPL LIFLSHFQII RPLNKLHHAF LRLGNNVELI QVKTSGDDEL NELGKEFNRM
SLKLFKSNEK IRELAFNDPL TGLPNRFMFT KHLNLSLESA KCDRGQLAVM FIDLDNFKHI
NDSLGHQSGD QLLHEIGDRL HRNLRSKDFC EHFSDSDMVA RLGGDEFTVF LGELPSINIA
EKVAKRILEI ISQPILLSGK SYYISASIGI ACYPQNGVTT QELIKNADIA MYHAKKKGKG
GYQHFSDNLS RQNDEFSVIE QKMHEAVENE RFELYFQPIV DSNTHRIVSL EALIRWYDVE
FGFIPPDKFI PLAEKNGLIT VIGDWVIREA CRQLKIWQDS GIVDIQLAIN VSAIQLNNPK
FAQELYQTIK NSGIIPGTLY IELTETTIIN GEQEIFVTLE WLRSKGIRVA LDDFGTGYSS
LSYLRNLPID ILKIDQSFIR DINDKNNNVI LSAVIVMAHA LGFKVVAEGV EERGHLAFLV
KEGCDLLQGY MFSRPQTADD ITRLLLKETK EEESKTG
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