| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2389 |
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| Symbol | |
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| ID | 5613054 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2907329 |
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| End bp | 2909554 |
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| Gene Length | 2226 bp |
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| Protein Length | 741 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933300 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474126 |
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| Protein GI | 157375526 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCTAA GTTATGAATC AATAATACCC GTTATTCCGA GCCTAACCGA TTCTAATGTC
AGTATAAAAC GCTACGGCGC CATACTGACC ATGCTGTTAG ATGGCTCTCC TCTCGAAGAG
ATTCTTATCG CTCTGGTTCT TCACATTGAA GAGGAGAAGC TGGGCACGAA AGGCTCTGTA
CTGCTATTGA GCGATGACGG TAAACGTCTT CTCAATGGTG CGGCTCCAAA TCTTCCCGAT
GATTATAATC AAGCGATTCA TGGTATTGAG ATCGGTGATG GTGTCGGCTC TTGCGGCACT
GCGGCATCTA CCGGTCAAAG GGTTATCGTC GAAGATGTCG AGACTCACCC CTTTTGGGAG
GTCTTTAAAG CATTGCCTCT GGCAGCGGGT CTTAACGCTT GTTGGTCTGA GCCTATCAAG
GGCAGTCAGG GAAAAGTGCT GGGTACGTTT GCCATGTACT ATGACACCAT TAAGTCTCCT
ACTGAGAAAG ACCTGTTACT CATTTCGGAA GCGGCCAGAC TTGCTAGCTT GGCCATCGAG
CGAAGCAGGG CGCTTCAGTT CGAGCGGTTA ACGGGAAATA TCTTCAACCA TCTCCCCTTG
GGGCTGGTGA TCACCGATCT GCACTGGACT GTTCTGAATG CCAACCCGGC ATTTTATGCG
ATAACTGAGC TTACTTCGGG CCTTGAAACC AAATTTGACC CGGTACAGTT TTTTAAACGA
TCGGGGGAAG ATACACTCGA TAGTATGCTT GCCAGCCTGG CTACCAAAGA AGCCTGGCAG
GGAGAGCTCG TTGGCACCAG AGCGTCAGGT GAGAGTTTCT ATCTGGAAGT GACAGTGAAC
ATGTTTAAAG AGCGCGGTTC ACAAGAGCTA TGTTACTCGT GGTTATTCAG TGATATTACC
GAACGTAAAC GCGCCTCAGC CCTAATCGAT TATCAAGCAA ATTATGATTC ATTGACGCAA
CTGGCCAACC GTAACTATCT GTTTAAAATT GTTCAAGCCG AAATAGAGTC CGATAGCTTA
AGTCCGGGCT TTGGTTTTAT GTTGATGGAT CTTGATAATT TCAAGCAGAT CAACGACACC
TTAGGCCATG ATAAGGGTGA TCAACTTCTT GTCGAGGTGG CAAAACGAAT CGAATCCAGT
ACTAAAGGTA GGGCCTTGGT TGCTCGATTA GGAGGTGATG AATTTGCGCT TTTCCTGCCT
GGTATGGTCA AAGAGAGCGA TCTTGTCCGG CAGGCACATG CAATCAATGA CTCGGTTGTT
TTGCCCTATC TGTTGGGCCA GGACAAGCGT GTATTAACCA GTATCAGTAT CGGTATTGCC
AGATTTCCAG AAGATGCCAT GAACCTTGAA CAGGTACTCA ATTGTGCCGA TCAGGCGATG
TATATCTCGA AGAGTGAGGG ACGAAACTGT TTTCACTTCT TTACTCAGCA GATGCAACTT
GATGCAGAAC TAACGGCCAA ACTACATAAC GACCTAAAAT TTGCACTGGA GACTAATGCA
TTCGAACTCT ACTATCAGCC GATTGTCTGT CTGGAAGAGA ATAAAATAGT TCGAGCAGAG
GTGTTATTAA GGTGGAAGCA TGAAGGGGCT TTCATCTCCC CTGAAGTGTT CATCCCCGTC
GCCGAAAGCA GTGGATTGAT CGTCGAGTTG GGTCACTGGG TTCGTAAAGA AGCCATGGCT
TCTCTGCTGG AGTTTAAGCG TAAAGGGATA GAGATCGGTC TGTCGATCAA TGTTTCTATG
TACGAGTTTT GGTCCCACGC TTTACAAGAT TGTCTTGTCA CCTCGATTAA TGATATCGCC
GTGGATTTAA CCACGGATAG TTTCCCTTTC GATGGTATTA CTTTGGAGAT CACCGAGTCG
CTCTTGATGA AGCAGCATCA GCATCTCATC GATGCACTCC AGAAGCTGAG AGATATGGGG
ATAGAAATTG CGGTCGATGA TTTTGGTACG GGTTACTCCT CCTTATCTTA TTTGAGTCAT
TTCCCAGTCG ATCACATCAA GATAGATAAA TGTTTTATTC AAGAGTCCGG CTCTTCGGTG
AAACAACAAG CTTTGGTAAA GGCTATCACC ACATTGAGCC ATGCGCTGGA TCTACACGTG
ATTGCGGAGG GGGTAGAAAC TGAAGAGGAG CTTCAGTTTG TTCGATCTGC AGATATCGAG
GCCGTTCAGG GCTATTACTT CTATAAACCT ATGCCTAAAC AGAACTTGCT GACTTTGCTG
GAGTAA
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| Protein sequence | MSLSYESIIP VIPSLTDSNV SIKRYGAILT MLLDGSPLEE ILIALVLHIE EEKLGTKGSV
LLLSDDGKRL LNGAAPNLPD DYNQAIHGIE IGDGVGSCGT AASTGQRVIV EDVETHPFWE
VFKALPLAAG LNACWSEPIK GSQGKVLGTF AMYYDTIKSP TEKDLLLISE AARLASLAIE
RSRALQFERL TGNIFNHLPL GLVITDLHWT VLNANPAFYA ITELTSGLET KFDPVQFFKR
SGEDTLDSML ASLATKEAWQ GELVGTRASG ESFYLEVTVN MFKERGSQEL CYSWLFSDIT
ERKRASALID YQANYDSLTQ LANRNYLFKI VQAEIESDSL SPGFGFMLMD LDNFKQINDT
LGHDKGDQLL VEVAKRIESS TKGRALVARL GGDEFALFLP GMVKESDLVR QAHAINDSVV
LPYLLGQDKR VLTSISIGIA RFPEDAMNLE QVLNCADQAM YISKSEGRNC FHFFTQQMQL
DAELTAKLHN DLKFALETNA FELYYQPIVC LEENKIVRAE VLLRWKHEGA FISPEVFIPV
AESSGLIVEL GHWVRKEAMA SLLEFKRKGI EIGLSINVSM YEFWSHALQD CLVTSINDIA
VDLTTDSFPF DGITLEITES LLMKQHQHLI DALQKLRDMG IEIAVDDFGT GYSSLSYLSH
FPVDHIKIDK CFIQESGSSV KQQALVKAIT TLSHALDLHV IAEGVETEEE LQFVRSADIE
AVQGYYFYKP MPKQNLLTLL E
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