| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2387 |
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| Symbol | |
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| ID | 5613052 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2902811 |
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| End bp | 2906083 |
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| Gene Length | 3273 bp |
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| Protein Length | 1090 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933298 |
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| Product | non-specific serine/threonine protein kinase |
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| Protein accession | YP_001474124 |
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| Protein GI | 157375524 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGTACAGC TAGAAGAGTA TTTTAGTCAG TCTGCAATAT TTCATGGTAT GCAGCTGTTG
TTGGCAGGGC TGTTAGTTAA GAGCGAACAA TCAGGTTTGA TTATTCGCGC CGAGTTTAAG
TCCGACGACG TGAATGCAGC CAGTACTAAA AACAGTACTC AAAAGCCATC GAGTCGGGGG
GCGGCCAGGA GCATTAGCTC TATCTATACA GCGCTCGATT GGTCGGCAGG TCCCGTTGTT
GCATCGACCC ACTCTCACTG CACTTGTCAT AATGAAGAGG ATAAGGCTTG TAAACATCTG
GCCGCCATTG CAATCGAGCA TGTCGCGAAA CAACACCCGA TAACTCCTTA CGCCAGCGAT
AAAAAAAGAC CCGATACGGC AAAAAGGCTG CTAAGGACAG AGCTAAATCA ACGCTTCGAT
CCCTATCCCA ATATGGCTCG TCACCGGATC ATCTATCTCT TGTCAGATAA CCAAGATGGA
TTACATCTGT CTGTACATAA AGGTTACCTG AGTAAAACCG GCATTTATTC GATTAAGAGC
TCCCTGGGGT TAGACGTGTT CACGAAAAGT GTATTGCCTA AGTTTGTCAC TCAGGCAGAC
AGATATTTAC TTGATAAGCT ATCTCTCTTG ATTGAGCAGT GCAGTGAAAA GGAAAAAGGA
AAACAACGAG ACGCCGTTTC AGTCAACCTG AGCGAACTGA CGGGGCTCGA CTTTATTCGG
CATCTGGTTT CGACTCAACG GTGTTTTTGG GAAAACTGTT CAAACCCGGC ATTAAAAATT
GAGCAACACT ACCATCAAGA TTTTCTGGAT CCGGCACCAT TTATTGAGAT CGATGCAGCT
AGCTACCTTG ATCTTGCAAG CATGAGCCTG CTCCTCACCT CCGACCCTTT TTCGATGCCG
GATATTAACC CCGATGCCGA GTTTGATTGG CAACCACAGT TGAGAGTTAC CCGGCATCAT
GTGGAATACC CTTGGGATGA TACGCATGCA TTGTCACTGG ACCTTGCTAA CTTCTCGCTA
GTTAATGGTG AGGTAGTTTA CTCATTGAGT GAGGTTTTTG ATTACGCTCA AGAAGTACCG
CACTGTTTAA ATTTAGCCGC AGAATGGAAC ATCCAACTGT CAGAACTGCC ATTATTAACT
TCGGTGTTTG AATCTCCCGT GTGGCAGGGA TTCCCCCTTG GTTGTCGTCT GCTACCCAGT
GTATTGAGTG AGCAGATGAT AGCCCTCTAC CGGTTATCGT TAGCGGGGTG GTGCATTGAA
TTTGATATGA AGAACCGATT CAGCATTGTA AAAGCTCAAC GTTGGTACGG TGAAGTTGCT
CAGGATTCTG GTAGTAAGAA TTGGTTTGAC CTCGAGATAG GTGTCGAAGT TAATGGCCAA
AAAATCAATC TGTTGCCTTA TCTTGTCAAA GCGATTCGCT TGGGGCTTGT CGAAAATATT
GAAGATCAAG ATACCATTTT AATGGAGCTC GATAGTGGCG AGCGACTCGC CTTACCTGTA
GATAGAGTCA AACAGATATT AGCCGTACTG GTCGAATTAT ATGAAGCAAG GCCACTGTCT
GATGACGAAT TGCTGACACT TCCCATGCAC CAGATGACAA GGCTCGCCGA GCTATCTTCA
CCGATAAAGA GCCAGCAGAA ACAGTGGCAT TGGCAGGGGA GCACCTGGTT AAATAATAAA
GCACAGCAGC TTTACTCATA TTTAGATAGT CAGGATCACA ATGATTTTTT TGTGTCTCAA
CCCGTTGGTT TAAATGCCAA ATTGAGAGAG TATCAACAGC AAGGTTTGAA TTGGTTACAG
TTTTTGCAAA ACCAGTCTTT CGCCGGGATC CTGGCCGATG ATATGGGGCT TGGAAAGACC
ATTCAGACTC TGGCGAGCAT TTTACTCGAT AAAGAGTCCG GACGACTAAC TAAGCCTTGT
TTAGTGGTTG CTCCGACGAG TTTATTAGCA AATTGGTTGC ATGAGGCGCA GACATTTACT
CCAACGCTTA ATGCACTCCT GTGGTCGGGT CCCAGACGTC ACAAGCTGGA GTCACAAGTT
GAATCGACCG ACCTATTAAT AACAAGTTAC GGTACCCTAC AGCAGGACTC ACAATTTTGG
GCCGATAAAC ACTTTCATCT GATTGTTTTG GATGAAGCAC AAACCATTAA GAATGTTCGT
AGTCGTATTG CCAAGGTGGT GGCGAGTTTA TCGTCCACGC ACAAACTGTG CTTAACGGGA
ACGCCACTGG AAAACCATTT AGGCGAATTG TGGTCCCTGT TCAATTTTTT GATGCCAGGT
TTTTTGGGAA CCTATGCGCA GTTTCAGCGT TTGTATCAAT TCCCGATAGA AAAAGATCAA
GATGATGAAA GGCGTCTAGC TTTAGTTAAG AGGATCAGTC CTTTTATGCT ACGCCGAATG
AAGTCGGATG TAGCGACCGA ACTGCCAGAA AAAACAATAA TTAATGAGTA TATTAGTTTA
ACTCAGGAGC AGGGCGATCT TTACGAAACC ATTCGTTTGA CTATGTCCGA AGAGGTGCAG
AAAGCGGTGA TGCTGTCAGG CATTAAGCGA AACCGTCTGG CGATAAGTAA TGCGTTACTG
AAACTCAGGC AGGTATGTTG TCACCCTCAA CTATTAAAAC TCAGTCATAG TCATATTAGT
CAGACAGAAG GTGTTACAGC ATCGAATGAT GAGAGTTTTC AGAGTGACGA TGTGACTTCG
TTTACTCAGG AAAGTGTCGA ACAGGGGCTA ACCGAATTTG CCACCGGCTC CGGTAAACTC
AATTGGTTGG CAGATAAACT TCCCTCCATG CTTGCAGAAG GGCGCCGAAT TCTTATTTTT
TCCTCTTTTA CCAGCATGTT AACCTTGATA GGTGAACTGT TGGAACAATT AGCCGTCACT
TATGTGGAAT TGACAGGTAA GAGCCGAGAC CGTGCAAGTT TAGTCAAACG TTTTCAGCAA
CATGAAGTCC CCGTTTTCTT AATCAGTTTA AAGGCCGGCG GTGCTGGATT GAACCTTACC
GCGGCCGATG TCGTTATTCA CATGGATCCG TGGTGGAACC CGGCTGCAGA GCAGCAAGCG
AGTGACCGAG CGCATCGTAT AGGGCAAGAT AAATCTGTAT TTGTCTATAA GTTGATCTGT
AAAGATACGG TGGAGGAGCG CATTCAGTTG TTACAGGAGT CTAAGCAGAG CCTTGCGCAG
AGTATCTATC AGCAAGAGGG CGCAAGCGTG ACTGAGATGA GTGGAGATGA TTGGCTCGAA
CTGCTTAAAC CAATCACCAT AGATGAATCA TAG
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| Protein sequence | MVQLEEYFSQ SAIFHGMQLL LAGLLVKSEQ SGLIIRAEFK SDDVNAASTK NSTQKPSSRG
AARSISSIYT ALDWSAGPVV ASTHSHCTCH NEEDKACKHL AAIAIEHVAK QHPITPYASD
KKRPDTAKRL LRTELNQRFD PYPNMARHRI IYLLSDNQDG LHLSVHKGYL SKTGIYSIKS
SLGLDVFTKS VLPKFVTQAD RYLLDKLSLL IEQCSEKEKG KQRDAVSVNL SELTGLDFIR
HLVSTQRCFW ENCSNPALKI EQHYHQDFLD PAPFIEIDAA SYLDLASMSL LLTSDPFSMP
DINPDAEFDW QPQLRVTRHH VEYPWDDTHA LSLDLANFSL VNGEVVYSLS EVFDYAQEVP
HCLNLAAEWN IQLSELPLLT SVFESPVWQG FPLGCRLLPS VLSEQMIALY RLSLAGWCIE
FDMKNRFSIV KAQRWYGEVA QDSGSKNWFD LEIGVEVNGQ KINLLPYLVK AIRLGLVENI
EDQDTILMEL DSGERLALPV DRVKQILAVL VELYEARPLS DDELLTLPMH QMTRLAELSS
PIKSQQKQWH WQGSTWLNNK AQQLYSYLDS QDHNDFFVSQ PVGLNAKLRE YQQQGLNWLQ
FLQNQSFAGI LADDMGLGKT IQTLASILLD KESGRLTKPC LVVAPTSLLA NWLHEAQTFT
PTLNALLWSG PRRHKLESQV ESTDLLITSY GTLQQDSQFW ADKHFHLIVL DEAQTIKNVR
SRIAKVVASL SSTHKLCLTG TPLENHLGEL WSLFNFLMPG FLGTYAQFQR LYQFPIEKDQ
DDERRLALVK RISPFMLRRM KSDVATELPE KTIINEYISL TQEQGDLYET IRLTMSEEVQ
KAVMLSGIKR NRLAISNALL KLRQVCCHPQ LLKLSHSHIS QTEGVTASND ESFQSDDVTS
FTQESVEQGL TEFATGSGKL NWLADKLPSM LAEGRRILIF SSFTSMLTLI GELLEQLAVT
YVELTGKSRD RASLVKRFQQ HEVPVFLISL KAGGAGLNLT AADVVIHMDP WWNPAAEQQA
SDRAHRIGQD KSVFVYKLIC KDTVEERIQL LQESKQSLAQ SIYQQEGASV TEMSGDDWLE
LLKPITIDES
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