Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2348 |
Symbol | |
ID | 5611327 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2855422 |
End bp | 2856054 |
Gene Length | 633 bp |
Protein Length | 210 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640933259 |
Product | hypothetical protein |
Protein accession | YP_001474085 |
Protein GI | 157375485 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2095] Multiple antibiotic transporter |
TIGRFAM ID | [TIGR00427] membrane protein, MarC family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0647314 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000000838099 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGGATTTAA CACTTTATGT TAAATTTTTT CTTGGATTAG TGGCGATCAT TAATCCCGTT GGCTTGTTAC CGGTTTTTGT CAGCTTAACC AGTCATCAGA CTGAAGCTGA ACGTAACCAT ACCGGTAAGG TAGCTAATTT TGCGGTGGTC GTCATTCTAT TGGTGACGAT TGTAGCGGGA CAACATATTT TGAATATGTT TAGTATTTCG CTTTCAGCAT TTCGTATAGC GGGTGGTTCG CTGATAGCCA TTATTGCCAT GTCTATGCTT CAGGGTAAGT TAGGTGAAGT GAAACGCAAT AAAGAGGAGG ACCGTGAAGC GTCGGGGATG GAATCCGTCG CAGTCGTTCC TTTAGCGCTG CCGTTAATGG CTGGCCCCGG TGCGATCAGT TCGGTAATCG TGTCGGCCGC AGAGCATGAT TCTTTCATTA ACCTTATCGG CATGTCTTTG ACAGTCGTCT TGTTTGGAAT AACGAGTTTT GTACTCTTTA GAATGGCACC TGTGATCTAT AAGGTTTTGG GAAAGACGGG AATTAACGTG ATCACACGTT TGATGGGACT ATTGATGCTA TCCATCGGAA TCGAAGTGAT TGCCGCAGGT TTCAAAGGCC TCTTCCCGAG TTTGCTGGGT TAG
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Protein sequence | MDLTLYVKFF LGLVAIINPV GLLPVFVSLT SHQTEAERNH TGKVANFAVV VILLVTIVAG QHILNMFSIS LSAFRIAGGS LIAIIAMSML QGKLGEVKRN KEEDREASGM ESVAVVPLAL PLMAGPGAIS SVIVSAAEHD SFINLIGMSL TVVLFGITSF VLFRMAPVIY KVLGKTGINV ITRLMGLLML SIGIEVIAAG FKGLFPSLLG
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