| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2317 |
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| Symbol | |
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| ID | 5610963 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2807920 |
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| End bp | 2809698 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933227 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474054 |
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| Protein GI | 157375454 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4805] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000037575 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00132048 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAAAG CAACACTGTC ATTAGCGGTA GCATTGTCAT TAACAGCACT CGCTGGTTGT
CAATCTCAAG AGGTAGCCGA ACAGGTATCG CCGGCTTCGA TAGCTTCAAG CCAACAGTTA
AGCTTTGCCC AATTTTCAAC GCAGTTTATA GACGAGCTAT GGAAGCAAGC ACCGACATGG
GCACTCTATA GTGGTTACCA TAAATATGAT GGCGTGCTTA AAGTGCCTAA CGATGCTAGC
CGCGCCGAGG CAATAAAGTT TAACAAGCAA CAACTGTCCA TGTTACAGGC CTTCGACAGA
GATTCATTGT CGGCTAATGA GCTTATCGAT TATCGTCTGA TTGAGAACTT GCTTAAACGT
GATACCTGGG AGATCACTAA GTTTAAATCC TGGCAGTGGA ACCCTGCATC GTATAACGTT
GCCGGCGGTT TTGCCCAGTT GATCAATGAA GATTTTGCCC CGCTCGATGA TAGGTTACGT
TCAGTATTGG CTCGAATGGA GAATGTCCCA GCCTATTACA GTGCCGCTCG GGAGAATATT
AATAACCCGA CACTCGAGCA CACTCAACTG GCTCAGATGC AGAATAAAGG TGCATTTTCT
GTTTTTTCAG CAGAACTGCT CGCACAAGCC GAAAGCTCGG GACTGACAAG CGATGAAAAG
GCATTGTTTA AAACGCGTTT CGATGCGGCG ACTCAGTCAA TCAATGAGCA TATCGCCTGG
CTGGGTGAGC TAGTATCTAA ACTGGAAAAA GAGGGCGCAC GCAGCTTCAG GATTGGTGAA
GCGCTTTATG AAGAGAAATT CTCTTTCGAT ATTCAAGCTG GAATGAGTGC AAAAGGATTG
TATGAAAAAG CCCTGGCTGA CAAAAGTCGG GTTCAGGGTG AGATGGCAAA GATCACCGCT
AAGCTATGGG ATACCTATTT CGACACTCCT AAACCTTTAG ATGATAATAA AGCTACGCGT
CAGCTGATCG ATAAACTCTC CTCTAAGCAT GTAAAACGTG AGGCGTTTGT CGATGAAGTT
CGTGCTCAGA TCCCAGCCTT GATAAAATTT GTCAATGACA AACAACTCGT TACCTTAGAC
CCTAAAAAGC CGTTAGTTGT ACGTGAAACA CCGGAATATA TGCGCGGCTT CGCCGGCGCC
TCTATCAGTG CTCCCGGGCC TTATGAGAAA TCCAGCAATA CCTATTACAA CGTTACGCCT
CTCGATGCCA TGGATGATGA GTCTGCCGAA AGTTATCTTA GAGAGTATAA CCACTGGATC
TTGCAGGTAC TGAATATTCA TGAGGCAATA CCTGGCCACT ACACTCAGCT GGTCTATTCA
AATGAGTCAC CTAGCATGGT GAAAAGCCTG TTTGGTAACG GTGCTATGGT AGAGGGCTGG
GCTGTTTATA CAGAGCGTAT GATGCTCGAA GAGGGTTATG GTGATTTTGA GCCCGAGATG
TGGCTGATGT ACTACAAGTG GAACCTACGA GTCATTGCCA ACACGCTACT GGATTACAGC
ATTCAGGTGA AGGGCATGAC AGAGGATGAA GCTATTAGCT TAATGACCGA AGAGGCATTT
CAACAAACCG CAGAAGCCGA GGGTAAGTGG AGAAGGGCGA CATTGAGTCA GGTTCAGTTA
ACCAGCTATT ACTCCGGCTA CCGTGAGATC TATGATTTTC GTGAAGAGTT AAAAGCGAAG
CAGGGGGAGC AGTTTGACCT TAAAGCATTC CACGAGCAGT TCTTAAGCTA TGGAAGTGCG
CCTGTTAAGT ATGTGCGTCA GTTGATGCTC AATCAATAA
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| Protein sequence | MKKATLSLAV ALSLTALAGC QSQEVAEQVS PASIASSQQL SFAQFSTQFI DELWKQAPTW
ALYSGYHKYD GVLKVPNDAS RAEAIKFNKQ QLSMLQAFDR DSLSANELID YRLIENLLKR
DTWEITKFKS WQWNPASYNV AGGFAQLINE DFAPLDDRLR SVLARMENVP AYYSAARENI
NNPTLEHTQL AQMQNKGAFS VFSAELLAQA ESSGLTSDEK ALFKTRFDAA TQSINEHIAW
LGELVSKLEK EGARSFRIGE ALYEEKFSFD IQAGMSAKGL YEKALADKSR VQGEMAKITA
KLWDTYFDTP KPLDDNKATR QLIDKLSSKH VKREAFVDEV RAQIPALIKF VNDKQLVTLD
PKKPLVVRET PEYMRGFAGA SISAPGPYEK SSNTYYNVTP LDAMDDESAE SYLREYNHWI
LQVLNIHEAI PGHYTQLVYS NESPSMVKSL FGNGAMVEGW AVYTERMMLE EGYGDFEPEM
WLMYYKWNLR VIANTLLDYS IQVKGMTEDE AISLMTEEAF QQTAEAEGKW RRATLSQVQL
TSYYSGYREI YDFREELKAK QGEQFDLKAF HEQFLSYGSA PVKYVRQLML NQ
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