| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2306 |
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| Symbol | |
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| ID | 5613473 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2793669 |
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| End bp | 2795957 |
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| Gene Length | 2289 bp |
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| Protein Length | 762 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933216 |
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| Product | ribonucleotide-diphosphate reductase subunit alpha |
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| Protein accession | YP_001474043 |
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| Protein GI | 157375443 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
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| TIGRFAM ID | [TIGR02506] ribonucleoside-diphosphate reductase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000160913 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATAGCA ATCTGAAAGT CACAAAACGC AGTGGCGAAC GTGAAACCAT CGACCTAGAT
AAAATCCACC GTGTCATCAC ATGGGCTGCC AAAGACCTCA ATAATGTATC GGTATCTGAA
GTTGAACTTC GCTCTCACCT GCAATTTTTT GACGGCATTC CAACAGAAGC TATTCATGAA
ACAATCATTA AAGCCGCTGC CGACCTGATC TCCCCGGAGT CTCCCGATTA CCAATTTCTT
TCGGCTCGTT TAGCGATATT CCACCTTCGT AAGAAGGCGT TCGGTCAATT CGAACCGCCT
AAACTCTACG AACATGTGGT TAAACTGGTT GAGATGGGCA AATATGACGC TCATATTCTG
CATGATTATA GTCGTGAAGA GCTCGATACC CTGGATGGTT ATATCGACCA CTGGCGTGAC
ATGAACTTTT CCTATGCCGC CGTAAAGCAA CTGGAAGGTA AATACCTGGT CCAAAACCGT
GTCACTCACG AAATCTATGA GAGCGCACAG TTTCTCTATA TCTTGGTTGC CGCCTGTCTG
TTTGCCAAAT ATCCAAAAGA GACACGTTTA ACCTACATCA AAAACTTCTA TGATGCGGTT
TCTACCTTCA AGATCTCTCT ACCGACTCCG ATAATGGCCG GTGTGCGTAC ACCTACACGT
CAATTCAGCT CATGTGTTCT GATCGAGTGC GGTGATAGCC TCGACTCTAT TAATGCGACA
GCGTCCTCGA TAGTTAAGTA TGTAAGTCAG AGAGCCGGTA TCGGTGTCAA TGCGGGTCGT
ATCCGCGCAT TAGGCAGCCC TATTCGCGGC GGTGAAGCAT TCCATACCGG TTGTTTGCCT
TTCTTCAAGT ATTTCCAAAC GGCGGTTAAG TCTTGTTCAC AAGGTGGCGT GCGTGGTGGT
GCAGCCACAC TATTCTATCC TCTGTGGCAC CTGGAAGTTG AATCTCTATT GGTTCTTAAA
AATAACCGCG GCGTCGAAGA TAACCGCGTT CGCCAGCTAG ATTACGGCGT ACAGTTAAAC
AAGGTGATGT ATCAAAGACT GATCAAGGGC GGCATGATCA CCCTATTTAG TCCATCTGAC
GTCCCAGGCC TCTATGATGC CTTCTTCGAA GATCAGGATG AATTTGAGCG CCTTTACCAT
CAATATGAGC AGGACGATTC TGTTCGTAAA ACACAAGTTA AGGCCGCTGA GCTATTTTCA
CTGCTTATGC AGGAGCGTGC ATCGACGGGT CGTATCTATA TTCAAAACGT GGATCACTGT
AATACCCACA GTCCCTTTGA CAGCAAAGTT GCGCCAATCA GACAGTCTAA CCTCTGTCTC
GAGATCGCAC TGCCAACAAA ACCACTGAAT AATATCGATG ATCCAGAAGG CGAGATTGCG
CTTTGTACCC TGTCGGCACT GAACTTAGGC GCCATAAAGG ATCTATCTGA ACTCGAACCC
CTTGCAGATC TTGCTGTTCG TGCACTCGAT AACCTACTCG ATTATCAGGA CTATCCAATC
ACTGCAGCTC AGAAGTCTTC GATGAACCGC AGAACATTGG GTATCGGTGT GATCAACTTT
GCTAACTACT TAGCGAAGGA AGGTGTGCGT TATTCCGATG GTTCGGCGAA CAACATCACT
CACAAGACCT TCGAAGCGAT TCAATATTAC CTATTGAAAG CATCGATGAA TCTGGCAAAA
GAGCAAGGTG CTTGCCCCTC TTTCCATGAG ACAAGCTATT CGAAAGGTAT TTTGCCTATC
GATACTTATA AGCGCCATCT GGATCAGATC TGTGATGAGC CGCTGCATAT GGATTGGGAA
ACATTGCGCC AGGATATCGT CCAACACGGG TTACGTAACT CTACCCTGTC TGCATTAATG
CCATCTGAAA CCTCTTCTCA GATCTCAAAT GCCACCAATG GCATCGAGCC ACCTCGTGGG
TTAATCAGTG TAAAATCCAG TAAGGATGGG CAACTTAAAC AGGTGGTTCC AGACTTTGAT
AAGTATCAAT ACAGCTATGA ATTGCTTTGG CAGATGCCGA ACAACGAAGG TTACCTGCAG
TTAGTAGGAC TGATGCAAAA GTTTGTCGAT CAGGCCATTT CGGCTAACAC CAACTATGAC
CCTAGCCGCT TCGAGGGTCA GAAAGTACCG ATGCAGGTGC TGCTAAAAGA TCTGCTCAAC
GCCTATAAAC TTGGTGTTAA GACACTCTAC TATCATAACA CTCGCGACGG AGCGACCGAT
TCTCACAGTG ACATTGTCAG TGTTGAGAAA GAGGACGAGG GTTGCGAAGG CGGAGCTTGT
AAGATCTAA
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| Protein sequence | MNSNLKVTKR SGERETIDLD KIHRVITWAA KDLNNVSVSE VELRSHLQFF DGIPTEAIHE
TIIKAAADLI SPESPDYQFL SARLAIFHLR KKAFGQFEPP KLYEHVVKLV EMGKYDAHIL
HDYSREELDT LDGYIDHWRD MNFSYAAVKQ LEGKYLVQNR VTHEIYESAQ FLYILVAACL
FAKYPKETRL TYIKNFYDAV STFKISLPTP IMAGVRTPTR QFSSCVLIEC GDSLDSINAT
ASSIVKYVSQ RAGIGVNAGR IRALGSPIRG GEAFHTGCLP FFKYFQTAVK SCSQGGVRGG
AATLFYPLWH LEVESLLVLK NNRGVEDNRV RQLDYGVQLN KVMYQRLIKG GMITLFSPSD
VPGLYDAFFE DQDEFERLYH QYEQDDSVRK TQVKAAELFS LLMQERASTG RIYIQNVDHC
NTHSPFDSKV APIRQSNLCL EIALPTKPLN NIDDPEGEIA LCTLSALNLG AIKDLSELEP
LADLAVRALD NLLDYQDYPI TAAQKSSMNR RTLGIGVINF ANYLAKEGVR YSDGSANNIT
HKTFEAIQYY LLKASMNLAK EQGACPSFHE TSYSKGILPI DTYKRHLDQI CDEPLHMDWE
TLRQDIVQHG LRNSTLSALM PSETSSQISN ATNGIEPPRG LISVKSSKDG QLKQVVPDFD
KYQYSYELLW QMPNNEGYLQ LVGLMQKFVD QAISANTNYD PSRFEGQKVP MQVLLKDLLN
AYKLGVKTLY YHNTRDGATD SHSDIVSVEK EDEGCEGGAC KI
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