Gene Ssed_2298 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2298 
SymbolrpsA 
ID5611064 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2781817 
End bp2783484 
Gene Length1668 bp 
Protein Length555 aa 
Translation table11 
GC content44% 
IMG OID640933208 
Product30S ribosomal protein S1 
Protein accessionYP_001474035 
Protein GI157375435 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0539] Ribosomal protein S1 
TIGRFAM ID[TIGR00717] ribosomal protein S1 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000879863 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000000196055 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGACTGAAT CTTTTGCTGA TCTATTTGAA CAATCCCTAA CTGAACTTGA GTTCCGTCCT 
GGTTCTATCG TAACTGGTAT AGTTGTATCT ATCCAGAACG GTATGGTACT AGTTGACGCT
GGTCTTAAGT CTGAAAGCCC AATCCCAGCT GAACAGTTCA AGAACGACCA AGGCGAACTT
GAAATCTCTG TTGGTGATTC TGTTGCTGTT GCACTTGACT CTGTTGAAGA CGGTTTCGGT
GAAACTCAAC TGTCTCGTGA GAAAGCTAAG CGTCACGAAG CATGGATTGT TCTAGAAAAA
GCGTACGAAG ATGCTGAAAC TGTAATCGGT GTCATTAATG GTAAGGTTAA AGGCGGTTTC
ACTGTTGAAT TAAACGGTAT CCGTGCATTC CTACCTGGTT CTCTAGTTGA CGTTCGCCCA
GTTCGCGATA CTGCTCACCT AGAAAACAAA GATCTAGAAT TTAAAGTTAT CAAGTTAGAC
CAGAAGCGCA ACAACGTTGT TGTTTCTCGT CGTGCTGTTA TCGAATCTGA AAGCAGTGCA
GAGCGTGATG CTCTTCTTGA GAACCTACAA GAAGGTCAAT CAGTTAAGGG TATCGTTAAG
AACCTTACTG ACTACGGTGC ATTCGTAGAC CTAGGTGGCG TTGACGGTCT ACTACATATC
ACTGATATGG CGTGGAAGCG TGTTAAGCAC CCATCTGAAA TCGTAAACGT TGGTGACGAA
ATCAATGTTA AAGTTCTTAA GTACGATCGT GAGCGCACTC GTGTTTCACT AGGTCTTAAG
CAACTTGGCG AAGATCCATG GTTAGAAATC AGCAAGCGCT ACCCAGAAAA CACACGTTTG
ACTGGTCGCG TTACTAACCT AACTGACTAC GGTTGTTTCG TTGAAATCGA AGAAGGCGTT
GAAGGTCTTG TTCACGTTTC TGAAATGGAT TGGACTAACA AGAACATCCA CCCATCTAAA
GTTGTTAACT TAGGTGATGA AGTTGAAGTT CTAGTTCTAG ACATTGACGA AGAGCGTCGT
CGTATTTCTC TAGGTCTTAA GCAGTGTAAA GTTAACCCAT GGGATGACTT CGCCGAGCGT
TTCCAGAAAG GCGACAAGGT TTCTGGTAAG ATCAAGTCAA TCACTGACTT CGGTATCTTT
ATCGGTCTTG ACGGCGGCAT CGACGGTCTT GTTCACCTAT CTGATATTTC TTGGAATGGT
ACTGGCGAAG AAGCTGTTGC TGAATACAAG AAAGGCGACG AGATCAACGC AGTTGTTCTT
TCAGTTGACC CAGAGCGTGA GCGCATCAGC TTAGGCGTTA AGCAAACTGA AGACGATCCA
TTCAATGCTT ATCTTGCAGA TAAGAAGAAA GGAACTGTTG TTAACGGTAC AGTTACTGCA
GTAGACGCTA AAGGCGTAAC TATTGAACTA GCTGACACTG TTGAAGGTTA CTTACGTGTA
GCTGATATCT CTCGCGAGCG TATCGAAGAT GCATCTACTG TTTACTCTGT AGGCGACGCT
GTTGAATCTA AGTTCATGGG TGTTGACCGT AAGAACCGTA CTATCAGCCT ATCTATCCGT
GCGAAAGATG AAGCTGAAGA GAAAGAAGCA ATGGCTAGCT TGAACAAGCA AGAAGACGCT
GTGATGAGCA GTGCTATGGC TGAAGCGTTC AAAGCAGCTC GCAAGTAA
 
Protein sequence
MTESFADLFE QSLTELEFRP GSIVTGIVVS IQNGMVLVDA GLKSESPIPA EQFKNDQGEL 
EISVGDSVAV ALDSVEDGFG ETQLSREKAK RHEAWIVLEK AYEDAETVIG VINGKVKGGF
TVELNGIRAF LPGSLVDVRP VRDTAHLENK DLEFKVIKLD QKRNNVVVSR RAVIESESSA
ERDALLENLQ EGQSVKGIVK NLTDYGAFVD LGGVDGLLHI TDMAWKRVKH PSEIVNVGDE
INVKVLKYDR ERTRVSLGLK QLGEDPWLEI SKRYPENTRL TGRVTNLTDY GCFVEIEEGV
EGLVHVSEMD WTNKNIHPSK VVNLGDEVEV LVLDIDEERR RISLGLKQCK VNPWDDFAER
FQKGDKVSGK IKSITDFGIF IGLDGGIDGL VHLSDISWNG TGEEAVAEYK KGDEINAVVL
SVDPERERIS LGVKQTEDDP FNAYLADKKK GTVVNGTVTA VDAKGVTIEL ADTVEGYLRV
ADISRERIED ASTVYSVGDA VESKFMGVDR KNRTISLSIR AKDEAEEKEA MASLNKQEDA
VMSSAMAEAF KAARK