Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2211 |
Symbol | |
ID | 5613120 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2669201 |
End bp | 2670628 |
Gene Length | 1428 bp |
Protein Length | 475 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640933115 |
Product | cbb3-type cytochrome c oxidase subunit I |
Protein accession | YP_001473948 |
Protein GI | 157375348 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG3278] Cbb3-type cytochrome oxidase, subunit 1 |
TIGRFAM ID | [TIGR00780] cytochrome c oxidase, cbb3-type, subunit I |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAACC ATTCCCAGCC ACAAGGCGCT GATTACAATT ACACCGTTGT CCGCCAGTTT GCCCTCACAA CAGTTTTGTG GGGAATTATT GGTATGTCAG TGGGTGTATT GATCGCGGCT CAGTTGATCT GGCCACAACT AAACTTCGAT ACTCCTTGGC TTACTTACAG TCGTCTTAGA CCTCTGCATA CTAATGCCGT GATTTTCGCG TTTGGTACTT CAGCACTTTT TGCAACATCC TACTATATCG TTCAACGCAC GTGTCAAACC CGACTTTTTG CACCCAAATT GGCTGCATTT ACATTCTGGG GTTGGCAAGC CATTATTCTT TCAGCAGTAC TGACTCTGCC TCTGGGTATC ACCAGTGGTA AAGAATATGC TGAACTTGAA TGGCCTATCG ACATCGCGAT CACCATAGTG TGGGTCACGT ACGCGATAGT TTTCTTCGGT ACTATTGTTA AACGAACGAC TTCCCATATT TATGTGGCGA ACTGGTTCTT CGGTGCCTTT ATTATCACTG TCGCTGTATT GCACATAGTT AACTCTATGG CTGTACCCGT CAGCTTATGG AAGTCTTACT CTCTGTATGC CGGTGCGGTC GATGCAATGG TTCAGTGGTG GTACGGTCAC AATGCCGTAG GCTTCCTGCT TACCGCCGGC TTCTTAGGTA TGATGTATTA CTTTGTACCT AAACAAGCGG GTCGTCCGGT TTACTCATAC CGTCTGTCTA TCGTTCACTT CTGGGCACTG ATTGCTCTGT ATATCTGGGC TGGTCCTCAC CACCTACACT ATACGGCGCT GCCGGATTGG ACTCAGTCGT TGGGTATGGT GATGTCACTT ATCTTATTCG CTCCTTCTTG GGGTGGTATG ATTAACGGTA TCATGACCCT GTCAGGTGCT TGGCATAAAC TAAGAACCGA TCCTGTATTA CGTTTCCTTG TTGTTTCATT GTCTTTCTAC GGTATGTCTA CCTTCGAAGG CCCAATGATG GCAATCAAGA CCGTAAACGC CCTATCTCAC TACACTGACT GGACCGTTGG TCACGTTCAC TCTGGTGCGC TAGGTTGGGT TGCGATGGTC TCTATTGGTT CGCTTTATCA CCTAATCCCT GTGCTTTACG GACATGGTCG TATGTATAGC TCTAACCTAG TTAATGTTCA TTTCTGGTTA GCGACTATCG GTACAGTTCT ATATATCGTA TCTATGTGGA TCTCTGGTGT GATGCAAGGT CTGATGTGGC GTGCAGTTAA CTCTGACGGT ACTCTGACTT ATAGCTTCGT TGAAAGTATT GAAGCTTCAT ACCCATTCTA CTTTGTTCGA TTCCTTGGTG GCTGTTTCTT TGTAACCGGT ATGCTTCTAA TGGCATATAA CGTGTTTAAG ACAGTAAAAG CGCCTAAAGA ATCTTTGCCT GCATTAGCAG AAGCATAA
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Protein sequence | MMNHSQPQGA DYNYTVVRQF ALTTVLWGII GMSVGVLIAA QLIWPQLNFD TPWLTYSRLR PLHTNAVIFA FGTSALFATS YYIVQRTCQT RLFAPKLAAF TFWGWQAIIL SAVLTLPLGI TSGKEYAELE WPIDIAITIV WVTYAIVFFG TIVKRTTSHI YVANWFFGAF IITVAVLHIV NSMAVPVSLW KSYSLYAGAV DAMVQWWYGH NAVGFLLTAG FLGMMYYFVP KQAGRPVYSY RLSIVHFWAL IALYIWAGPH HLHYTALPDW TQSLGMVMSL ILFAPSWGGM INGIMTLSGA WHKLRTDPVL RFLVVSLSFY GMSTFEGPMM AIKTVNALSH YTDWTVGHVH SGALGWVAMV SIGSLYHLIP VLYGHGRMYS SNLVNVHFWL ATIGTVLYIV SMWISGVMQG LMWRAVNSDG TLTYSFVESI EASYPFYFVR FLGGCFFVTG MLLMAYNVFK TVKAPKESLP ALAEA
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