Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2180 |
Symbol | |
ID | 5613805 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2635886 |
End bp | 2638309 |
Gene Length | 2424 bp |
Protein Length | 807 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640933084 |
Product | putative ATP-dependent protease La-relatedprotein |
Protein accession | YP_001473917 |
Protein GI | 157375317 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1067] Predicted ATP-dependent protease |
TIGRFAM ID | [TIGR00764] lon-related putative ATP-dependent protease |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACAT TTCCTCTTGT CTCCCCTCTT AGTAGTGACC AGCTCTACCG AACATCTGAA CTTTCGGATC TCGCTCCTGA ATTCAAATCC ACCAAAAACT TAAGCCCTAT CAATGAAATA GTGGGTCAGG AACGCGCTCA ACAAGCGGTT GAGTTTGCGA TGTCCATGAA GGATAAAGGC TACAATATCT ATGCTATCGG ACGTAATGGC TTAGGCAAGC GCACTATGGT ACTGCGCTAC CTCAACCGCC ACGAACCAAA TGGTAATGGG CATACCTTAT ATGACTGGTG TTATGTCATT AATTTCGACG AGGCCCGTAC GCCTAAAGTG CTGAAACTGC CCGCAGGCAC TGGAATGGAG CTAAAAAAAG ACATAGAGAA GCTCATGTTA CGTTTAGTCA AAGCCCTGCC GCTCGCTTTT GACAACGAAA TGTACTACTC CCGCGCCGAA AAACTCAAGG GGTTACTCGC CCAGAAACAG GAGTCCGCTT TGCTGGGGCT CACCAATGAG GCAAAAGAGT CCAGTATCAG CCTGACTATT ACCCCGCAGG GTAGCTATGA ACTGGTCGCC ATGAATGGTG AGGAACCCTA TACAGAAGAA TCCTTCGCTC AGCTGCCTAA GAAGAATCAA GATAAGTTAG AGACGGCCAT TACCTCACTG GAGTCGAAGC TCAGGGTTAT CGTCAGGAAG TTTACGGTTT GGGAAGAGGA GTATTCCGAA AAGCAGCTCA AGCATGATGA GCAGGTCGCT CAAGATGTAT TGGCTCACCT CACCGATAAG TTAAAAGATA AATACAGTAG CTTACCCGCA GTGAAAAGCT ATCTGTCTGG CATGCACAAA GATGTTATTG ATAATTTAGA CCTTTTCCTT GAAGAGAACG AGGAGCAATT GGCACTCTCC TACGCCTCAC TCGACAAGAA GATGCCAAGA CGTTATCAGA TCAATGTATT AGTAGGCCAA GATACTGAGA AGATGCCGAT CCACATTGAG GAGACGCCTA ACTATCACTC TATTTTTGGC TACATAGAGA ATGCGACCTT CAAAGGCACC ATCTTTTCTG ACTTCTCACT CATCAGACCC GGAAGCCTGC ATAAAGCCAA TGGCGGCGTG CTAATGATCG ACGCGATTAA GGTACTCGAA CAACCCTACG TTTGGGATGG GCTTAAACGC GCATTAAGAT CGAGAAAACT CAGCCTGAGC TCACTCGAAC GTGAAGTCAC CTTATCAGGG ACTATCTCAT TGGATCCTGA GGCTATCCCT TTAGATATCA AGATTATCTT GCTTGGCGAT TATCAGACCT ATCAGCTTCT ACAACACTAC GACCCTGAGT TCAGTGAGCT ATTCAGGGTT ACCGCAGACT TCGAAGACGT CATGCCACGC ACACAAAAAT CAGAAGCACA ATACGCACAA TTTATCTCGA GTATTATTCA CGGTAATAAG ATGCTTCATT GCGACCGTGG TGCGATAAAG CGCATTATAG AATTCAGCTC CCGACAGGCC GATGATCAAA ACAAACTGTC TCTGCATTCC GCCGATATTG CCAATCTGCT TCGAGAGTCT AACTATTGCG CTCGTGCGGT TAAGGCCAAT ATGATCCGCG CCAGCCATGT GGATCAGGCA CTGCATAATC ATGAGCTCAG GGTATGCCGT CTCAAAGACA ATGTGATGCA GAGTTTTGTC AATGGTACCA CCTTGATAAG TACTCAGGCC CATGCCATCG GGCAGGTCAA CGCCCTGTCT GTAATTGCGA CTTCAGATCA CCAATTTGGC GCGCCTAACC GGATAACCGC AACCACGGCA TATGGCGAGG GTAAGGTGTT CGATATCGAA CGAAAGGTCG AACTCGGTGG CAGTTTACAT TCCAAGGGGG TGATGATCCT CTCGGCTTAT CTGGCCTCTA TCTTAGGCAA AACGGCTAAG ATCCCCCTGA CGACTCACCT CACTTTCGAG CAGTCCTACG GCGGCGTCGA TGGTGATAGC GCTTCGATGG CGGAACTGTG TGCCATGGCG TCGGCGTTCT CTCAACAGCC CATCAGACAA GATATCGCTA TTACAGGCTC AATGAACCAA TTTGGCGAGG CTCAACCTAT CGGCGGCGTC AATGAAAAAA TCGAAGGCTT CTTCGATGTT TGTGCCATCA AAGGACGCAA GGCGACTCAG GGGGTGATTA TTCCTCAATC TAATGTCCAA AATCTGATGC TTCGTAAAGA TGTCGTCGAA GCGGTTAAGA AAGGCAAGTT TAATATTTGG GCAATCGAGC ATGTCACCCA GGCCATAGAA CTTCTGACCG GTATCCCTTC AGGAATGAAT GTCAAAGGCA GCGGTAAAAA AGCGTCATAT CCCGATAACT CTATCTTCGG TATGGCTCAA GCCCGATTGG AAAAATTGAG AGAGAAGCAC TCACGGGTGA GAAAAGGAGA ATAA
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Protein sequence | MKTFPLVSPL SSDQLYRTSE LSDLAPEFKS TKNLSPINEI VGQERAQQAV EFAMSMKDKG YNIYAIGRNG LGKRTMVLRY LNRHEPNGNG HTLYDWCYVI NFDEARTPKV LKLPAGTGME LKKDIEKLML RLVKALPLAF DNEMYYSRAE KLKGLLAQKQ ESALLGLTNE AKESSISLTI TPQGSYELVA MNGEEPYTEE SFAQLPKKNQ DKLETAITSL ESKLRVIVRK FTVWEEEYSE KQLKHDEQVA QDVLAHLTDK LKDKYSSLPA VKSYLSGMHK DVIDNLDLFL EENEEQLALS YASLDKKMPR RYQINVLVGQ DTEKMPIHIE ETPNYHSIFG YIENATFKGT IFSDFSLIRP GSLHKANGGV LMIDAIKVLE QPYVWDGLKR ALRSRKLSLS SLEREVTLSG TISLDPEAIP LDIKIILLGD YQTYQLLQHY DPEFSELFRV TADFEDVMPR TQKSEAQYAQ FISSIIHGNK MLHCDRGAIK RIIEFSSRQA DDQNKLSLHS ADIANLLRES NYCARAVKAN MIRASHVDQA LHNHELRVCR LKDNVMQSFV NGTTLISTQA HAIGQVNALS VIATSDHQFG APNRITATTA YGEGKVFDIE RKVELGGSLH SKGVMILSAY LASILGKTAK IPLTTHLTFE QSYGGVDGDS ASMAELCAMA SAFSQQPIRQ DIAITGSMNQ FGEAQPIGGV NEKIEGFFDV CAIKGRKATQ GVIIPQSNVQ NLMLRKDVVE AVKKGKFNIW AIEHVTQAIE LLTGIPSGMN VKGSGKKASY PDNSIFGMAQ ARLEKLREKH SRVRKGE
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