Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2161 |
Symbol | |
ID | 5609665 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2613537 |
End bp | 2614436 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640933065 |
Product | periplasmic binding protein |
Protein accession | YP_001473898 |
Protein GI | 157375298 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGATATC CAAGTCCCCT GCTGGCGCTT TGTCTGACTT TCTGTCTGGC ATTAAGCTGT AGTTCTTCTG CCAGCGCCGA GAAGCAACCT CGCTTAATCG TATTGGCACC CCATGCCGTC GAGATGATAT TCGAAATCGG CGCCGGAGAT ACCATCATAG GTACGGTCGA GTATGCCGAT TATCCCAATG AAGCAAACCA AATTCGTCGT ATCGGTCGTT ACGATTTTAT CGATTATGAA GCGGTGATGC TGCTTCAGCC TGATGCCATC ATAGTCAACA CCAGCACCAC CTCAGCCCCT ATGCAGACAA GACTCAAAGA GCTGGGCTTT ACCTTGATAG ACTCAAGCGT CAGTGAGCTG AAGCAGATCC CACAGCGTCT GCTGGAGTTA GGAGATATAA CTGGTCAACA GCAAGAAGCA AAACGGAGTG CAGAGAAATT TGAAAGCACT CTGGCCGGGA TCAAGAGCCA GTATCAAGAC CTGGCCCGTA TCGATCTCTT TTATCAGGTT TGGCCTGCGC CACTCACGAC GACGGCCAGC AGCTGGATGA ATGAGATATT TGTAGGTTGC GGCGCCAATA ACGTCTTCGC TGACAGTGTC AGTGAGTATC CCCAGGTGAG TCTTGAGCAG GTCCTCTCCT CTACACCCGA GATGATCATC AAGCCGATAT ACCACGGTAA CAGTAATCAG GAGGCCATTA ACTGGGTCGA ATGGCCGGAG ATCCCTGCAG TTGCAAATGA GCAGATCATT ACCATCGAAG GCGATCTTGT CCATAGAACC GGGCCGCGGG TGTTAAAAGG CATGCAGCAG GTGTGTGAAA AAGTGGCACA GGCCCGTGCT CAGAAACAAT CACAGAAACA ATCACAGAAA CTGTCTATCC AAAAGGCTGC AATCCAATGA
|
Protein sequence | MRYPSPLLAL CLTFCLALSC SSSASAEKQP RLIVLAPHAV EMIFEIGAGD TIIGTVEYAD YPNEANQIRR IGRYDFIDYE AVMLLQPDAI IVNTSTTSAP MQTRLKELGF TLIDSSVSEL KQIPQRLLEL GDITGQQQEA KRSAEKFEST LAGIKSQYQD LARIDLFYQV WPAPLTTTAS SWMNEIFVGC GANNVFADSV SEYPQVSLEQ VLSSTPEMII KPIYHGNSNQ EAINWVEWPE IPAVANEQII TIEGDLVHRT GPRVLKGMQQ VCEKVAQARA QKQSQKQSQK LSIQKAAIQ
|
| |