| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2118 |
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| Symbol | |
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| ID | 5613688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2565948 |
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| End bp | 2566580 |
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| Gene Length | 633 bp |
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| Protein Length | 210 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640933021 |
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| Product | riboflavin synthase subunit alpha |
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| Protein accession | YP_001473855 |
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| Protein GI | 157375255 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0307] Riboflavin synthase alpha chain |
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| TIGRFAM ID | [TIGR00187] riboflavin synthase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00247576 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0673441 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAAATGA GAGAAATTAT GTTTACAGGT ATAGTTCAAG CCACGTGCGA AGTGGTTGCG
ATAAATAAGA AAGATGGCTT AAATACGCTT GAGATCGCTA TGGAACCCGA GTTACGTGAG
GGGCTCATAA CAGGCGCGAG TGTTGCTAAC AACGGTGTCT GTTTAACGGT TACACGAATT
GCAAATGATA GGGTGTTTTT CGACGTAATG GAAGAGACTT TGAGTGTGAC CAACCTCTCA
AATTTAACTC TTGGTTCTAA GGTGAATATA GAGCGCTCTT TAACTTTCGG CAGTGAAATT
GGTGGTCATA TTTTATCAGG CCATGTTCAT ACCCAGGCTC GTATACTCGA AGTGAGTAAT
ACCAATAGCC ATTTTGATAT CAAACTGGGG GTTGACCCCA AATGGATGAA CTACATTCTC
TATAAAGGAT TCGTCGGCGT TAATGGTTGC AGTTTAACTG TTGGTGAAGT AACCGATAGC
AGTTTCATGT TGCATCTAAT TCCAGAGACA TTAAAACTGA CGAACCTCGA TGATTCGAAG
GTAGGGGGAT GTCTGAATAT TGAAATAGAT AGTCAAACTC AGGCAATTGT CGATACTGTC
GAGCGTGTAC TGGCCAAACG CGCAGGTTCA TAA
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| Protein sequence | MQMREIMFTG IVQATCEVVA INKKDGLNTL EIAMEPELRE GLITGASVAN NGVCLTVTRI
ANDRVFFDVM EETLSVTNLS NLTLGSKVNI ERSLTFGSEI GGHILSGHVH TQARILEVSN
TNSHFDIKLG VDPKWMNYIL YKGFVGVNGC SLTVGEVTDS SFMLHLIPET LKLTNLDDSK
VGGCLNIEID SQTQAIVDTV ERVLAKRAGS
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