Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2113 |
Symbol | |
ID | 5611812 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2556254 |
End bp | 2558860 |
Gene Length | 2607 bp |
Protein Length | 868 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640933010 |
Product | aconitate hydratase |
Protein accession | YP_001473850 |
Protein GI | 157375250 |
COG category | [C] Energy production and conversion |
COG ID | [COG1048] Aconitase A |
TIGRFAM ID | [TIGR01341] aconitate hydratase 1 [TIGR02333] 2-methylisocitrate dehydratase, Fe/S-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATACCT CATACCGTAA ACCATTACCG GGTACAGATT TAGATTATTA TGATACCCAA GCCGCCGTCG ATGCCATCAG CCCCGGTGCC TATAGCAAAC TTCCCTATAG CTCTCGTGTA TATGCCGAAA ACCTGGTACG CCGCTGCGAC CCTGCTAAGC TCACCGATTC GTTAAAGCAG ATCATCGAAC GTAAGCGAGA CCTCGATTTC CCTTGGTACC CCGCACGCGT GGTTTGCCAC GATATTTTAG GCCAAACGGC TCTGGTTGAT CTGGCTGGTT TACGTGATGC GATTGCCGAT AAAGGGGGAG ATCCGTCGAA GGTTAACCCG GTAGTGCCGA CTCAGCTAAT TGTCGATCAT TCACTGGCTG TTGAGCATGC GGGTTTTGAG AAAGATGCCT TCGAGAAAAA CCGCGCCATT GAAGACAGAC GAAATGAAGA CCGATTCCAT TTCATCAACT GGACTAAAAC CGCCTTTAAA AATATCGATG TGATCCAGCC GGGTAACGGC ATCATGCATC AGATTAACCT CGAGAAGATG TCGCCTGTTG TGCAATCCCG TGATGGCGTC GCTTTCCCCG ATACCTTAGT CGGTACCGAC AGCCATACGC CCCATGTCGA TGCATTAGGC GTAATCGCAA TCGGCGTCGG TGGACTGGAA GCCGAAAGCG TAATGCTGGG CCGCCCATCT TATATGCGCC TGCCGGACAT CGTCGGCGTC GAGCTGGTGG GTAAGCGTCA GAGCGGCATT ACCGCTACCG ATATCGTGCT GGCTATCACT GAATTCCTGC GTAATGAGAA AGTGGTTTCT ACTTACCTCG AGTTCTTCGG CGAAGGTGCG GCGAATCTGA CCTTGGGCGA TCGCGCAACG ATCTCAAACA TGACTCCTGA GTTTGGCGCC ACTGCCGCCA TGTTCTATAT CGATGATAAG ACCATTGATT ACCTGAAACT AACGGGGCGT GATGACAGCC AGGTTAAGCT CGTCGAAACC TACGCTAAGC AGAGCGGACT TTGGGCCGAC AGCCTAAAAG ATGCAGAATA TGAGCGTGTA CTGCACTTTG ACCTGTCGGC GGTAGGACGT AACATTGCCG GGCCATCTAA CCCACATCGC CGCGTATCCA CGAGTGATCT TGCCGAAAAA GGCATTAGTG GCGTTGTTGA GAATGAAGAG GGCTTAATGC CCGATGGCGC CTGTATTATC GCTGCGATCA CCAGTTGTAC TAATACCTCT AATCCACGTA ACGTGATTGC CGCGGGCTTG CTTGCGCGTA ACGCAAATAC AAAAGGACTG ACCCGTAAGC CGTGGGTAAA AACCTCATTA GCACCGGGAT CTAAAGCGGT TCAGTTGTAT CTTGAAGATG CGAACTTATT GCCTGAGCTT GAAGCGCTCG GTTTCGGTAT CGTCGGTTTT GCCTGTACCA CCTGTAATGG CATGAGCGGT GCGTTAGATC CTGTGATTCA AAAAGAGGTG ATCGAACGCG ACCTTTACAC TACAGCAGTA CTTTCGGGTA ACCGTAACTT CGATGGTCGT ATTCATCCTT ACGCTAAGCA GGCTTTCCTG GCGTCGCCAC CTTTGGTTGT CGCCTACGCG ATTGCCGGTA CTATTCGATT CGATATCGAG AAAGACAGCC TGGGAACAGA TAGCGACGGC AATGCGATAA CACTTAAAGA TATCTGGCCA TCTGATGAAG AGATCGATGC CGTTATCGCG AAGAGCGTGA AGCCAGAGCA GTTCCGAAAA GTCTATGAGC CGATGTTCGA CATTAAAGTG GAGTATGGCA CCGATAACGA TCCGCAATAC GATTGGCGTC CACAGAGTAC CTATATTCGT CGCCCTCCAT ATTGGGAAGG CGCGTTAGCA GGTGAGCGTA CCATGAAGGG GATGCGACCA CTGGCGGTGC TTGGTGATAA CATCACAACC GATCACCTGT CACCGTCTAA TGCCATCATG CTGGACAGTG CCGCTGGCGC CTATCTGGAT AAAATGGGCT TACCTGAAGT GGATTTTAAC TCCTATGCAA CGCATCGCGG TGATCACCTG ACCGCACAGC GCGCTACCTT TGCAAATCCT AAGCTGTTTA ATGAGATGGT GACTCAGCTA GGTAAGAATG GTGAAGTCGA GGTTAAGCAA GGCTCTTTTG CGCGTATCGA GCCAGAGGGA CAAGAGTCAC GTATGTGGGA AGCGATTGAG ACCTACATGG AGCGCAAGCA GCCGCTTATC ATTATTGCGG GTGCCGATTA TGGTCAAGGC TCATCACGGG ATTGGGCGGC CAAGGGCGTT CGTCTTGCCG GTGTTGAGGT GATTGTCGCC GAAGGGTTCG AGCGAATTCA CCGTACCAAC CTAGTTGGTA TGGGCGTCTT ACCGCTTGAG TTCACTAATG GTGATAATCG TCATAGCTAT CAAATCGACG GTACAGAAAC CTATGATGTG TTTGGTGAAC GAACACCTGG CGCGGCATTA ACTGTGGTGA TGACGCGTAA AAACGGTGAG CATGTTGAAA TAGCGGTTAA GTGTCGCTTA GATACTGCCG AGGAGGTCTC TATCTATGAG GCTGGCGGTA TCTTGCAGCG CTTCGCTCAG GACTTCTTAG CGTCGTCTGT TGCATAA
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Protein sequence | MNTSYRKPLP GTDLDYYDTQ AAVDAISPGA YSKLPYSSRV YAENLVRRCD PAKLTDSLKQ IIERKRDLDF PWYPARVVCH DILGQTALVD LAGLRDAIAD KGGDPSKVNP VVPTQLIVDH SLAVEHAGFE KDAFEKNRAI EDRRNEDRFH FINWTKTAFK NIDVIQPGNG IMHQINLEKM SPVVQSRDGV AFPDTLVGTD SHTPHVDALG VIAIGVGGLE AESVMLGRPS YMRLPDIVGV ELVGKRQSGI TATDIVLAIT EFLRNEKVVS TYLEFFGEGA ANLTLGDRAT ISNMTPEFGA TAAMFYIDDK TIDYLKLTGR DDSQVKLVET YAKQSGLWAD SLKDAEYERV LHFDLSAVGR NIAGPSNPHR RVSTSDLAEK GISGVVENEE GLMPDGACII AAITSCTNTS NPRNVIAAGL LARNANTKGL TRKPWVKTSL APGSKAVQLY LEDANLLPEL EALGFGIVGF ACTTCNGMSG ALDPVIQKEV IERDLYTTAV LSGNRNFDGR IHPYAKQAFL ASPPLVVAYA IAGTIRFDIE KDSLGTDSDG NAITLKDIWP SDEEIDAVIA KSVKPEQFRK VYEPMFDIKV EYGTDNDPQY DWRPQSTYIR RPPYWEGALA GERTMKGMRP LAVLGDNITT DHLSPSNAIM LDSAAGAYLD KMGLPEVDFN SYATHRGDHL TAQRATFANP KLFNEMVTQL GKNGEVEVKQ GSFARIEPEG QESRMWEAIE TYMERKQPLI IIAGADYGQG SSRDWAAKGV RLAGVEVIVA EGFERIHRTN LVGMGVLPLE FTNGDNRHSY QIDGTETYDV FGERTPGAAL TVVMTRKNGE HVEIAVKCRL DTAEEVSIYE AGGILQRFAQ DFLASSVA
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