Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2073 |
Symbol | |
ID | 5614244 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2512063 |
End bp | 2512704 |
Gene Length | 642 bp |
Protein Length | 213 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640932970 |
Product | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase |
Protein accession | YP_001473810 |
Protein GI | 157375210 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0800] 2-keto-3-deoxy-6-phosphogluconate aldolase |
TIGRFAM ID | [TIGR01182] Entner-Doudoroff aldolase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.119512 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0282113 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTTGAGA ATAACTGGTC GTTACAACCA CAAGATATTT TTAATCGAAG CCCTATTGTT CCTGTTATGG TTATCAATAA GATTGAAGAT GCCGTGCCAT TAGCCAATGC ACTCGTTGCA GGTGGAATTA GCGTACTCGA GGTGACGCTG CGTACACCTT GCGCTCTGGA AGCGATAACC AAAATTGCCA AAGAGGTGCC CGATGCCTTA GTCGGTGCCG GTACGATTCT GAATGAAACA CAGTTGAAGC AGGCGGAAGA AGCCGGCGCT CAATTTGTTA TCACACCTGG TGCAACACCG AGTCTATTGA AGGCCGCTAT GGCGGGAAAA ATCCCTTTGA TTCCTGGTGT TGCCAGTATA TCTGAAGTGA TGACTGGTAT GGCATTGGGG TATACCAATT TTAAGTTTTT CCCGGCCGAA GCATCGGGTG GCGTAAATGC TCTTAAGGCA TTCTCAGGTC CTCTTGCGGA TATTCGCTTC TGTCCAACGG GTGGCATTAC ACCTAGCAGT TACAGAGATT ACCTGGCGCT TAAAAATGTC GATTGTATCG GTGGCAGCTG GATAGCCCCA TCGGATGCGA TGGAGCAGGG TGATTGGGAG CGCATTACAC AGTTGTGTAA AGAAGCGATC AGCGGTATTT AA
|
Protein sequence | MLENNWSLQP QDIFNRSPIV PVMVINKIED AVPLANALVA GGISVLEVTL RTPCALEAIT KIAKEVPDAL VGAGTILNET QLKQAEEAGA QFVITPGATP SLLKAAMAGK IPLIPGVASI SEVMTGMALG YTNFKFFPAE ASGGVNALKA FSGPLADIRF CPTGGITPSS YRDYLALKNV DCIGGSWIAP SDAMEQGDWE RITQLCKEAI SGI
|
| |