Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2069 |
Symbol | |
ID | 5611539 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2506862 |
End bp | 2507716 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640932966 |
Product | DNA-binding transcriptional regulator HexR |
Protein accession | YP_001473806 |
Protein GI | 157375206 |
COG category | [K] Transcription |
COG ID | [COG1737] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000131353 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000414379 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATACCC TTGAAAAGGT TCAAAAAAGC CTTGCACATT TTAGTAAATC AGAGCGCAAA GTTGCTGAGG TTATTCTAGC CTCCCCCCAA ACGGCGATCC ACTCTAGTAT CGCCACTTTG GCAAAGATGG CAGATGTCAG TGAACCTACC GTCAATCGCT TCTGCCGACG ATTAGATACT AAAGGCTTTC CTGACTTTAA ACTTCATCGA GCTCAAAGCT TAGCTAATGG CACGCCGTAT GTCAGCCGAC ATGTAGAAGA AGATGACAGT CCTGATTCCT ATACGACAAA AATCTTCGAA TCTTCAATGG CTTCGCTCGA TACTGCTCGT CAGAGTATGG ATACCGCCGC GATAAATAAA GCCGTTGATA TATTGACTCA AGCTAAGAAG ATCTCTTTCT TCGGCCTTGG AGCCTCGGCT TCTGTGGCCC ATGATGCGCA AAATAAATTT TTCCGCTTCA ATGTACCTGT TATCTGTTTC GATGACGTTT TAATGCAGCG TATGAGCTGC ATCAATAGTG GTGAGGGTGA CGTTATCGTA CTGATCTCCC ATACAGGCCG AACTAAGTCT ATGATAGATA TCGCCCGTAT TGCTCGCGAG AATGGTGCTG CAGTCATTGG TCTCACGGCA AGAAACTCGC CTCTATCTAG CGAATGTACC CTGCCCGTCA CCATGGAAGT ACCAGAAGAT ACCGACATGT ACCTCCCTAT GGCGTCCCGT CTGGCACAAT TAGTGGTTAT CGATGTGTTA GCTACCGGAT TCACCTTGCG ACGAGGACCA CGCTTTAGAG AGAGTCTGAA GCGAGTTAAA GAGGTATTGA AGGAATCTAG AATTGATAAA GATCCCATAC TGTAA
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Protein sequence | MNTLEKVQKS LAHFSKSERK VAEVILASPQ TAIHSSIATL AKMADVSEPT VNRFCRRLDT KGFPDFKLHR AQSLANGTPY VSRHVEEDDS PDSYTTKIFE SSMASLDTAR QSMDTAAINK AVDILTQAKK ISFFGLGASA SVAHDAQNKF FRFNVPVICF DDVLMQRMSC INSGEGDVIV LISHTGRTKS MIDIARIARE NGAAVIGLTA RNSPLSSECT LPVTMEVPED TDMYLPMASR LAQLVVIDVL ATGFTLRRGP RFRESLKRVK EVLKESRIDK DPIL
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