| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2067 |
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| Symbol | |
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| ID | 5614118 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2502628 |
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| End bp | 2504904 |
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| Gene Length | 2277 bp |
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| Protein Length | 758 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932964 |
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| Product | acyl-CoA dehydrogenase |
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| Protein accession | YP_001473804 |
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| Protein GI | 157375204 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1960] Acyl-CoA dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0937287 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000695411 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACTCTAC TCATACTTGC ACTACTCGTA ATCATTGTGC TTTTTGGTGT CAAAAACATC
AGGATGCAGT TTATCACTCG TCCGATTTTT TCATTTTTTA AGAAGTTACT TCCGCCTTTG
TCCGATACAG AAAAAGAGGC GATGGAAGCC GGCGATGTTT GGTGGGAAGG TGAACTTTTC
AGGGGTAAGC CTAACTGGGA AACACTACAT AGCTACGGTA AGCCTAAGCT GACCAATGAG
GAACAAGATT TTATCGACAA TCAGGTCATG ACGGCACTGA CCATGATTGA TGATTTCGAT
ATTGTTCACA ACCGTAAAGA CCTGCCACCA GAGCTTTGGG AATACTTTAA GAAAGAAGGC
TTCTTTGCTC TTATCATCCC AAAGCAATAT GGAGGTAAGG CATTCTCGGC TTATGCTAAC
TCAACTATTG TTGCTAAATT AGCCAGCCGA AGTGTAAGTG CGGCCGTGAC GGTAATGGTG
CCTAATTCTT TAGGACCGGG CGAACTTCTT ACCCATTATG GTACACAAGA GCAGCGCGAA
AATTGGTTAC CTAAACTCGC CTCTGGTGAA GCGGTGCCTT GCTTTGCATT AACGGGTCCC
GAAGCGGGCT CTGATGCTGG CGCGATTCCG GATGAAGGCA TCGTCTGTCG ACAGGAGTTT
GAAGGTGAAG AGGTATTAGG ATTAAAACTT AACTGGGATA AGCGTTACAT TACGCTGGCG
CCGGTTGCTA CAGTATTGGG GCTCGCCTTT CAAATGCGCG ATCCCGACGG CCTACTGGGT
GATAAAGAAG CCCTTGGTAT CACATGTGCC CTGATCCCAA CGGATCATCC GGGTGTGAAA
GTGGGTCAGC GACATAACCC ACTGGGCATG GCATTTATGA ATGGCACCAC ATACGGAGAA
GATGTCTTTA TCCCGCTGGA TTGGATCATC GGTGGTCCAC AATACGCGGG CAGAGGTTGG
AGAATGCTGG TTGAGTGTCT CTCTGCCGGC CGAGGGATCT CATTGCCTGC ACTGGCAACG
GCTTGCGGTC ACACAGCCAC TAAGACCACT ACCGCCTACA GCTATGTACG TCATCAATTT
GGTTTATCAA TTGGTCAGTT TGAAGGTGTT CAAGAGGCAT TGGCCAGAAT CGTTGCCAAT
ACTTATCAGC TTGAAGCGGC AAGGCGTCTG ACGACTACAG GTATTGACCT GAAGGTGAAG
CCATCGGTTG TCACTGCGAT CGCAAAGTAT CATATGACAG AGATGAGCCG TGATGTGCTT
AATGATGCGA TGGATATTCA GTCAGGCAAA GGGATCCAAC TTGGACCGAA AAACTATTTA
GGTCATCCTT ATATGGCCAA CCCTATTTCG ATTACGGTCG AAGGGGCAAA TATTTTGACC
CGCAGTTTGA TGATCTTTGG CCAGGGCGCG ACACGTTGTC ACCCTTATGT ACTTGCTGAG
ATGGAAACTG CCGCCATGGA AGATTCCAGC GCGGCATTGG AAAGGTTTGA TTCTCTACTG
TTAGGCCATA TTGGCTACGG TGCCCGAAAT GCGTTTAGTT CGCTATTTTG CGCATTAACC
GGCAGCCGAT TCAATCAATC GCCGGTTAGC GGTGAAACAC AGCAATATTA TAAGGATATG
ACCAGGCTTT CGTCGGGTCT GGCCTTCATC ACAGATCTTT CTATGTTGAT CATGGGCGGT
GACCTTAAGC GCAAAGAGAT GTTGTCAGCA AGATTGGGTG ATGTGCTCAG CGAATTATAC
TTAGGTTCTG CGACCTTAAA GCTGTTCGAA GATAATGGCC GTCAGCAAGA TGATCTCCCT
GCCGTACGAT TTGTGATGGC AACCCGATTA CAGAAAGCGG CAAAAGCCTT GGATGGTGCG
TTGCGTAACT TCCCGAATCG CCCTGTTGCT TGGGTAATGA GAGCCTTGAT TTTCCCTATA
GGTAATCATT TTAATGGTCC TACGGATAAA ATGACGACAG ATTTAGCTAA GGGAATGTTG
CAACCTGGAC CTGCCAGAGA CAGGCTTACA TTCCTTTGTC CCGAGTTTGA CGGTGATAAA
GGTGGTATTG CCGAGGTTGA AGATGCATTT CTTGCTCAAT TTGAATGCCG CAACACTTAT
AAGAAGATCA AAAAAGCTCA GCGTGCGGGA ACCTTACCTA AGAAAATGAG CAACATGGCA
CTCTTTGAGA TGGCTCTTGA GGTATCAATC ATCAATAAAG GTGAGTTTGA AGCTATTATG
AACGCAGACA AATTACGTTT AATCGCGATT CATGTTGATG AGTTTGAAAC GCTGTAA
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| Protein sequence | MTLLILALLV IIVLFGVKNI RMQFITRPIF SFFKKLLPPL SDTEKEAMEA GDVWWEGELF
RGKPNWETLH SYGKPKLTNE EQDFIDNQVM TALTMIDDFD IVHNRKDLPP ELWEYFKKEG
FFALIIPKQY GGKAFSAYAN STIVAKLASR SVSAAVTVMV PNSLGPGELL THYGTQEQRE
NWLPKLASGE AVPCFALTGP EAGSDAGAIP DEGIVCRQEF EGEEVLGLKL NWDKRYITLA
PVATVLGLAF QMRDPDGLLG DKEALGITCA LIPTDHPGVK VGQRHNPLGM AFMNGTTYGE
DVFIPLDWII GGPQYAGRGW RMLVECLSAG RGISLPALAT ACGHTATKTT TAYSYVRHQF
GLSIGQFEGV QEALARIVAN TYQLEAARRL TTTGIDLKVK PSVVTAIAKY HMTEMSRDVL
NDAMDIQSGK GIQLGPKNYL GHPYMANPIS ITVEGANILT RSLMIFGQGA TRCHPYVLAE
METAAMEDSS AALERFDSLL LGHIGYGARN AFSSLFCALT GSRFNQSPVS GETQQYYKDM
TRLSSGLAFI TDLSMLIMGG DLKRKEMLSA RLGDVLSELY LGSATLKLFE DNGRQQDDLP
AVRFVMATRL QKAAKALDGA LRNFPNRPVA WVMRALIFPI GNHFNGPTDK MTTDLAKGML
QPGPARDRLT FLCPEFDGDK GGIAEVEDAF LAQFECRNTY KKIKKAQRAG TLPKKMSNMA
LFEMALEVSI INKGEFEAIM NADKLRLIAI HVDEFETL
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