Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2064 |
Symbol | |
ID | 5612272 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2498889 |
End bp | 2499740 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 640932961 |
Product | alpha/beta fold family hydrolase |
Protein accession | YP_001473801 |
Protein GI | 157375201 |
COG category | [R] General function prediction only |
COG ID | [COG2819] Predicted hydrolase of the alpha/beta superfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00685345 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATCTGTT ATTTACCAAA GGAAGTTGCA TTGAAACTAA TCACATTTGT TTTTGTTTTT CTATGTAGTA CGCCGTTATT GGCCGATACC GTCTTTGAGA TCCCAAGAAG TACAGTTGTT GAATTACAAG AGACTAAGAC TGAAAGAGTT TATCCGCTGT TTATCAAGTT ACCACGATCC TATTATTCAG AAGTTAAGCG AAAGTATCCG GTTATCTATT TAACCGATGC CTGGTACAGT TTTCAAATCG TTTCCGGAGC GACTCGTTTT CCGATGAATA GTGGTGTAAT GGAAGAGGCC ATTATTGTCG GAATTTCATA CGCTAAAGGT TCAAGGGGAT CTGCGAGTCG AATACGAGAT TACACACCGA TAAAAGCCGA TAGCTGGAAA CTTGAAACGG GTAATGCCGA TGGGCATATA TCGTTCTTTA AAAATACAGT TTTCCCTCAC ATTGAGAGTC ATTATAGAGC AAGCTCAACA CAGAGGACAT TTGTCGGTAA CTCTCTGGGT GGTTTGCTTG GAACCTATAT TCTATTTACA CAACCTGATA TGTTTTCAAG TTACATTATT GGCAGCCCCT CGCTCTGGTA TAACGATAGT TACCTATTGT CAGAGTCAGT AAAAACGCCC GCTAGCCCAG TTCGGTTATA TTTGTCTGTA GGCAGTCTGG AGAGGCCTGA ATACGGTCAA AACCAAGACT TGGTTGCCGG GGCCAACGCC TTGGCAGATA AGCTTAAAGA TCATAAGTAT CCAAATCTTG ACCTGAAATT TTCAGTTATC GAAGGTGCCA GGCATGCTAC TGCTTTTCCT ACTACTGTGA TTCAAGGATT GGATTGGTTA TACGGCAAAT GA
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Protein sequence | MICYLPKEVA LKLITFVFVF LCSTPLLADT VFEIPRSTVV ELQETKTERV YPLFIKLPRS YYSEVKRKYP VIYLTDAWYS FQIVSGATRF PMNSGVMEEA IIVGISYAKG SRGSASRIRD YTPIKADSWK LETGNADGHI SFFKNTVFPH IESHYRASST QRTFVGNSLG GLLGTYILFT QPDMFSSYII GSPSLWYNDS YLLSESVKTP ASPVRLYLSV GSLERPEYGQ NQDLVAGANA LADKLKDHKY PNLDLKFSVI EGARHATAFP TTVIQGLDWL YGK
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