Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2062 |
Symbol | |
ID | 5612270 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2497435 |
End bp | 2498352 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640932959 |
Product | hypothetical protein |
Protein accession | YP_001473799 |
Protein GI | 157375199 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3965] Predicted Co/Zn/Cd cation transporters |
TIGRFAM ID | [TIGR01297] cation diffusion facilitator family transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00314891 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAGATA AAATTGGATC TATTGAGCGC CAATCGATTT CTATCGGTAT TGTGGCTAAC TTGGTGATGG CATTGAGTGG GTGGGCTACC TTTTATCTTT CTGGCTCTCA GGCTTTACTG CTCGACGGTA ACATGTCATT TATTCTGTTT TTATCTTCGA TAGTGGCGCT GAAAATATCG AAAATTAAGA CTATTCGCTC GGAGAAATTC CCCTTTGGTT TGTACGTGAC CGAAGCGCTG TATTCACTGA TGAAAGGCTT GTTGCTGCTC GGCGTTATCA TCTCGGCTAT CACCTCTAAC GCCAGTAAGA TCTTCCAATA CCTGGAAGGA GAGCCGATTA ACATGATAAA AACCGGACCA ATCGTTTACT ATGCCATAGC CATGGTATCG ATCTGTTGGG GATTATCGGC ATTTTATCGA ATGCAAAACA GACGTATCAA GATGGGCAGC TCAATGCTTA AGGTTGACCA GAAGGCCTCA TTTATCGACG GCATGCTTTC CGCTTCCACC GGTACGATCT TGGTGGTGAT TGGTTATGTT CAACCCGGTA CTCAACTCGA TTTTCTGCTC TATATTGGCG ATGCCTTGTT AGTGATACTG CTCGCTATTG CGATGCTTGG TCAGCCGTTC GGCATCATTA AAGACGCATT CATTGAATTG GCGGGTGGCA AGTTACAGGA TGAAGTACAA CATCAAGTTA TCGAAGATAC GGTAAACCGC CAACTCGAGC TGCGAGGAAT AACCTCAGAG GCGCTGAATA TAGGTAAGAC GGGGAGCAGT TACCTGGTGA TTATCAGCCT GTCTTTTAGT AAGTTGGCAG GGCATAACAG CAGTGCCATC ATGGGGTTTA AGGAATCACT GACAGCAGAG CTTGCAGGTG AACTCACCTT TGTCGATGTC GAATTGGTGC TGATTTAA
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Protein sequence | MKDKIGSIER QSISIGIVAN LVMALSGWAT FYLSGSQALL LDGNMSFILF LSSIVALKIS KIKTIRSEKF PFGLYVTEAL YSLMKGLLLL GVIISAITSN ASKIFQYLEG EPINMIKTGP IVYYAIAMVS ICWGLSAFYR MQNRRIKMGS SMLKVDQKAS FIDGMLSAST GTILVVIGYV QPGTQLDFLL YIGDALLVIL LAIAMLGQPF GIIKDAFIEL AGGKLQDEVQ HQVIEDTVNR QLELRGITSE ALNIGKTGSS YLVIISLSFS KLAGHNSSAI MGFKESLTAE LAGELTFVDV ELVLI
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