| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2059 |
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| Symbol | |
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| ID | 5611688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2494356 |
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| End bp | 2495885 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932956 |
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| Product | hypothetical protein |
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| Protein accession | YP_001473796 |
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| Protein GI | 157375196 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0409241 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0351139 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGTGG ACTACTTGAT TGTCGGTAGT GGATTATCAG CATTAGTGTT CGGCGCACTC
AGCGCAAAAG CAGGCAGTAA AGTGATAATG CTTGAAGCAC ATCAGTACCC CGGAGGTTTC
GGCCATACCT TCCCAATGGG CAAGCATTAC AAATTCAACG CACAGCTTCA TTATGTCTGG
AATTGTGGAG AGGGGGAAAC GGTTAACAAG GTTCTCAAGA AACTCGAACT CGATAAACAG
GTGACCTTCG AGTCATTCGA TCCTCAAGGG TTCGATCATA TGCGTATGCC TGGATACCAA
CTCGATATTC CCTATGACAT AGATCTACTG CTCACTCGTC TATGGGCGCT GTTTCCTGAG
CATGTTAAAC AGTGCACCGC CTTTATCGAT GAAGTCAGGC GTACTGCCGA CGGATTAGAG
GTGCTATCCG GCGATGAACG GTATAGGAAT ATCTTCAAAA ACTTCGGTCA AACAGTCACT
GCGTTTAACA ACATCAGATC TACCCTGCAG GAGGTCTTTG ACAAACATCA GTTACCTCTG
GAGGCGCAAA CACTGCTTGC TCTGCAATGG CCGGACTTTT TACTGCCACC CAATCAGCTT
TCATTTTGTG CCTGGGTTCT GCTTTTCACC GGTTATCAAA GGGGCGCCTA TTACCCTACC
CTGCATTTCG AGCATGTCAT TAACTCCTTG GCGAAGACCA TTGAAGATAA TGACGGGCAG
ATAATCTATG AGACTCATGT AGACAAATTT ATCGTTGAAA ACAATCGGGT GCTTGGGGTT
GAAGCAAGAG ATCTAAATAG CCAAGAGGCC GCACACTATG AGGCAAAATA CACCATCTGT
AATATGGATC CCAAGAAAGC CGCACACTTG ATTGGCATCG AAAAGTTCTC TTTGAAGTTA
CGCAGGCAGT TGGACTATGC CTATTCGCCC TCGAATTTTA TGGCTTACTG TTCGGTAAAG
GATATCAATT TACAAGACTA TGGTTTTGGT AGATGGAATA TCTTCCATAC CTGTGAGCCC
GATCTTAACG TCGCGTTCGA TGCCATGTAT AACCAACATG ATTACTCGGC CCCAAGTTTT
GCCATCTCCA CCCCAGGCTT TTTAACTGAT GACCATTCAG ACCGGCCTGA GGGCCAACAG
ATCATAGAAT TTTTGACCGT CGCCGATTAT CAATATTTTA AAGATCTGAA GGAGGACGAT
TCCAGAGCTT ACCGGAAGAG AAAAAGAGGC ATCTTAGATA AAATATTAGA TATCGTCGAA
GAGACTTACA TCCCTGATTT CAGAGAACAT TTAGCCTATA AGAATACAGG TAGCCCGACG
ACAAACGAAA ATTTCTGTTG GTGCCCTCAA GGTAACTCAT ATGGTTCGGC GATGACGCCC
AACTATTTCA ATCTGTTCAG ATTAAATCAT AACAGCTCAT TGAAAGGTCT CTATTTTTGT
AATGCCTCAT CCGGATTTGC AGGTTTCGCC GGTACATTTT GGACCGGGGC TAAGCTTTAC
CAGAATCTGA CAGGAGAGCG CATTCTATAA
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| Protein sequence | MDVDYLIVGS GLSALVFGAL SAKAGSKVIM LEAHQYPGGF GHTFPMGKHY KFNAQLHYVW
NCGEGETVNK VLKKLELDKQ VTFESFDPQG FDHMRMPGYQ LDIPYDIDLL LTRLWALFPE
HVKQCTAFID EVRRTADGLE VLSGDERYRN IFKNFGQTVT AFNNIRSTLQ EVFDKHQLPL
EAQTLLALQW PDFLLPPNQL SFCAWVLLFT GYQRGAYYPT LHFEHVINSL AKTIEDNDGQ
IIYETHVDKF IVENNRVLGV EARDLNSQEA AHYEAKYTIC NMDPKKAAHL IGIEKFSLKL
RRQLDYAYSP SNFMAYCSVK DINLQDYGFG RWNIFHTCEP DLNVAFDAMY NQHDYSAPSF
AISTPGFLTD DHSDRPEGQQ IIEFLTVADY QYFKDLKEDD SRAYRKRKRG ILDKILDIVE
ETYIPDFREH LAYKNTGSPT TNENFCWCPQ GNSYGSAMTP NYFNLFRLNH NSSLKGLYFC
NASSGFAGFA GTFWTGAKLY QNLTGERIL
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