| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2057 |
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| Symbol | |
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| ID | 5612384 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2491071 |
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| End bp | 2492906 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932954 |
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| Product | peptidyl-dipeptidase A |
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| Protein accession | YP_001473794 |
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| Protein GI | 157375194 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1164] Oligoendopeptidase F |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000365175 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.118156 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACGTT TATCTCCAAA GCTTTCAAAG CTTTCATTTC TAGTCGCTCT GTCTATCGGT
GCCACGGCAT GTAACAGCGC ACAAACCTCT GATGCAGCTG CTCAATCTAA GACTGATGAA
GCCAAGCAAT TTATTCAGGG TTCAGAGAAA CAACTTAGCG AACTTTCTAT AGAAATAAAT
CGCGCAGAGT GGATCTACAG TAACTTCATT ACCCAGGATA CGGCAGCCCT TTCTGCTGCC
GTAGGTGAGA AACAGACTGC CACAGCTGTA AAACTGGCCA CCATGGCAGC CAACTATACT
CAGCTTCCTC TAGATGAGGT AAGTCTGCGT AAACTTAATA TTTTACGCAG CTCTTTGGTG
CTACCGGCCC CTCTCGATCC TAAGAAAAAT GCCGAACTTG CAAACATAAG CGCCGAGTTG
AACGGACTTT ACGGAAAAGG AAAGTACTGC TTTGACGATG GACGTTGTTT AACTCAACCC
GAACTGTCAG CCATCATGGC TGAATCACAA AACCCGGCGG AGCTGCTAGA AGTCTGGAAA
GGATGGCGAG AAATTGCCAA ACCTATGCGC CCTCTGTTTA AACGTGAAGT CGAGCTGGCA
AATGAAGGGG CAAAAGATCT TGGCTACGCC AACCTATCTG AGTTATGGCG TAGTCAGTAC
GACATGAAGC CCGACGAGTT TTCTAACGAA CTCGACCGTC TATGGGGACA AGTTAAGCCA
CTTTATGACT CACTTCATTG TTATGTTCGT GGCGAGTTAA ATGATGAGTA CGGCGATGAT
GTTGTCTCGA AAGATGGACC CATACCTGCG CATCTGCTGG GTAATATGTG GGCACAGAGT
TGGGGTAATA TTTACGCTAA AGTCGCGCCA CAGGATGCCG ATCCCGGATA TGACGTTACA
GAGCTTCTCG CACAACATAA CTATGATGAA CTAAAGATGG TAAAACAGGC TGAAGGCTTC
TTCAGCTCCC TGGGTTTTGC CGAGTTACCC GACACATTCT GGGAACGTTC TCTGTTTGTT
CAACCTAAAG ACAGAGATGT GGTCTGTCAT GCCTCAGCCT GGGATCTCGA TGATTTAGAC
GATATCCGCA TCAAGATGTG TATTCAAAAA ACGGCCGAAG ATTTTACCGT TATTCATCAC
GAACTTGGCC ATAACTATTA TCAACGCGCC TACAAAGAGC AGCCGTTTAT CTTTAAAAAT
AGTGCCAATG ATGGCTTCCA TGAAGCGATT GGTGACACCA TCGCTCTATC CATCACCCCA
AGCTATCTTA AACAGATAGG TTTACTGGAC GAAGTACCCG ACGCATCGAA AGATATCGGC
CTGCTACTTA AACAGGCATT AGATAAAGTC GCCTTTATGC CATTTGGCTT GATGATCGAC
CAATGGCGCT GGAAGGTATT CAGTGGTGAG ATCACGCCGG AACAATATAA TCAGGCATGG
TGGGATCTAA GGGAGCAATA CCAAGGCGTG AAGGCGCCAA TTGCGCGAGG TGAAGAGAAC
TTTGATCCCG GCGCTAAGTA TCATGTGCCA GGTAACGTTC CCTATACTCG CTATTTCTTA
GCCCATATCC TACAGTTCCA GTTCCACAAG GCACTTTGTG ACATTGCCGG TGACAAGGGC
CCGGTTCATC GTTGTAGTAT CTACGGCAAC AGGGAAGCGG GCGCTAAACT TAACGCTATG
TTAGAGATGG GACAGAGTCG CCCATGGCCT GAAGCATTGG AAGTGGTCAC AGGTAGTCAG
GAGATGGACG CCCGCGCCGT TCTCGATTAC TTCGCGCCAT TACAGGTCTG GTTAGATAAG
CAAAACAGTG AAGCGAATCG TCAGTGTGGT TGGTAG
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| Protein sequence | MTRLSPKLSK LSFLVALSIG ATACNSAQTS DAAAQSKTDE AKQFIQGSEK QLSELSIEIN
RAEWIYSNFI TQDTAALSAA VGEKQTATAV KLATMAANYT QLPLDEVSLR KLNILRSSLV
LPAPLDPKKN AELANISAEL NGLYGKGKYC FDDGRCLTQP ELSAIMAESQ NPAELLEVWK
GWREIAKPMR PLFKREVELA NEGAKDLGYA NLSELWRSQY DMKPDEFSNE LDRLWGQVKP
LYDSLHCYVR GELNDEYGDD VVSKDGPIPA HLLGNMWAQS WGNIYAKVAP QDADPGYDVT
ELLAQHNYDE LKMVKQAEGF FSSLGFAELP DTFWERSLFV QPKDRDVVCH ASAWDLDDLD
DIRIKMCIQK TAEDFTVIHH ELGHNYYQRA YKEQPFIFKN SANDGFHEAI GDTIALSITP
SYLKQIGLLD EVPDASKDIG LLLKQALDKV AFMPFGLMID QWRWKVFSGE ITPEQYNQAW
WDLREQYQGV KAPIARGEEN FDPGAKYHVP GNVPYTRYFL AHILQFQFHK ALCDIAGDKG
PVHRCSIYGN REAGAKLNAM LEMGQSRPWP EALEVVTGSQ EMDARAVLDY FAPLQVWLDK
QNSEANRQCG W
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