Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2048 |
Symbol | |
ID | 5609979 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2481935 |
End bp | 2482633 |
Gene Length | 699 bp |
Protein Length | 232 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640932941 |
Product | ExsB protein |
Protein accession | YP_001473785 |
Protein GI | 157375185 |
COG category | [R] General function prediction only |
COG ID | [COG0603] Predicted PP-loop superfamily ATPase |
TIGRFAM ID | [TIGR00364] exsB protein |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.49129 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.261357 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAAAAG TGTCAAAAGC GGTAGTTGTA TTTAGTGGCG GACAAGATTC GACCACCTGT CTGATCCAAG CACTCAATCA ATATGATGAA GTACATGGTA TTACGTTCGA CTACGGACAG CGCCATAGTC AGGAGATTGA GGTAGCCAGA TCTCTGGGTC AACGCCTCGG GTTGGTCAGT CATAAGATAT TGGATGTCTC TATGCTCAAT GAGTTAGCCA TATCAGCCCT AACTCGAGAT TCAATTGAAG TATCCAATGA GCTTATGGAA AATGGATTAC CCAATACTTT TGTACCCGGC AGAAATATTC TGTTTCTCAC TCTGGCAGGG ATCTACGCGT ACCAATTAGG CGCCGACTCC GTCATTACCG GCGTCTGTGA AACCGATTTT TCAGGCTACC CGGATTGCAG AAATGACTTC GTTAAGACGA TGGAGTCGGC ATTGAATCAA GGAATGGATC GACAATGTAA AATCGTCACC CCCTTAATGT GGTTAAATAA AGCCGAGACC TGGGCTTTAG CCGACCAATA TAAGAGCCTC GAGTTAGTCA GAGATGAAAC ATTAACCTGT TATAACGGCA TCATTGGCAA TGGGTGCGGG ACCTGCCCTG CTTGTCTTCT CAGACAAAGT GGCTTAGAGG ACTACAGTAA TAACAGGGAG CAAGTTCAAT CGGACTTAGC ATCTAAATGT CACAAATAA
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Protein sequence | MSKVSKAVVV FSGGQDSTTC LIQALNQYDE VHGITFDYGQ RHSQEIEVAR SLGQRLGLVS HKILDVSMLN ELAISALTRD SIEVSNELME NGLPNTFVPG RNILFLTLAG IYAYQLGADS VITGVCETDF SGYPDCRNDF VKTMESALNQ GMDRQCKIVT PLMWLNKAET WALADQYKSL ELVRDETLTC YNGIIGNGCG TCPACLLRQS GLEDYSNNRE QVQSDLASKC HK
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