| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2018 |
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| Symbol | thiH |
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| ID | 5613840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2442223 |
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| End bp | 2443347 |
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| Gene Length | 1125 bp |
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| Protein Length | 374 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932904 |
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| Product | thiamine biosynthesis protein ThiH |
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| Protein accession | YP_001473755 |
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| Protein GI | 157375155 |
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| COG category | [H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1060] Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes |
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| TIGRFAM ID | [TIGR02351] thiazole biosynthesis protein ThiH |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.705115 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCTTCT TCTCTTATCT GCAAAACCTT GATCGGGAGA AGCTGAAGCT CAGGCTCTAT
TCGACAACCA GAGATGACGT TGAAAGGGCA CTCATATCAC CTGTAGGTTC ACTCGACAGC
CTATTGGCCT TACTTTCCCC TGCGGCAGAA GATTTTCTAG AAGAGATGGC GCAGCGATCA
AAGGCCCTGA CAAGGCAAAG GTTTGGCGCT AATGTCGGTA TGTATCTGCC TCTATACCTG
TCAAATTTAT GTGCTAATGA GTGTGATTAT TGCGGTTTTA GCATGAGTAA CAAACTGAAA
AGAGAGACCC TGAGTCTTAA AGGTATCGAT GCCGAGATGG CCGTGATTAA AAAATCTGGC
TACGACTCGA TACTGCTGGT TTCGGGAGAA CACGAAACAA AAGTCGGAAT AGATTATTTT
AAAACTGTCC TACCGAGAGT AAAACAAAAT TTCAGTTACC TTGCGATGGA AGTTCAACCG
CTTAAGGAGA GCGAATACTC TGATTTGGTC GGCTTAGGGT TAGATGCGGT GATGATCTAT
CAAGAGACTT ATAACCCGAA TACCTACGCA AAACATCACA CCAGAGGTAA AAAGCGGGAT
TTTGGCTATC GATTGGGTAC CCCGGAAAGA GTGGCCAGAG CCGGCGTCGA TAAAATAGGT
ATCGGCGTGC TACTGGGTTT AGATGATTGG CGCTTAGATG CACTGCTATT GGGCCATCAC
CTCTCTTATC TCGAGTCCAG GTTTTGGCGT TCTCGTTACA GTGTCTCATT GCCCAGGTTA
AGGCCCTGCA CGGGAGGTAT CACTCCCAAA GTAGAGTTGA CAGACAAAGG CCTGGTTCAG
TTGATTTGTG CGTTCAGACT GTTTAATCAA CAGCTTGAGA TCAGTCTTTC TACACGTGAG
TCTGCACAAT TACGCGATAA TTTGTTTGAA CTTGGGATCA CCAATATCAG TGCAGGAAGT
TCGACTCAAC CCGGTGGTTA TGTTAAGCCG GATACTCAGT TAAACCAGTT CGATATTAGC
GATGAACGAT CGGCGCAAGA GGTGGGTGCT GCGATCAAGG CCAAAGGCTT GAACCCGGTT
TGGAAGGACT GGGAGTCGGC GTGGGTCCCA ACTCATTCTG CGTGA
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| Protein sequence | MSFFSYLQNL DREKLKLRLY STTRDDVERA LISPVGSLDS LLALLSPAAE DFLEEMAQRS
KALTRQRFGA NVGMYLPLYL SNLCANECDY CGFSMSNKLK RETLSLKGID AEMAVIKKSG
YDSILLVSGE HETKVGIDYF KTVLPRVKQN FSYLAMEVQP LKESEYSDLV GLGLDAVMIY
QETYNPNTYA KHHTRGKKRD FGYRLGTPER VARAGVDKIG IGVLLGLDDW RLDALLLGHH
LSYLESRFWR SRYSVSLPRL RPCTGGITPK VELTDKGLVQ LICAFRLFNQ QLEISLSTRE
SAQLRDNLFE LGITNISAGS STQPGGYVKP DTQLNQFDIS DERSAQEVGA AIKAKGLNPV
WKDWESAWVP THSA
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