| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1993 |
|---|
| Symbol | |
|---|
| ID | 5613371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2409727 |
|---|
| End bp | 2410455 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640932877 |
|---|
| Product | DNA-directed DNA polymerase |
|---|
| Protein accession | YP_001473730 |
|---|
| Protein GI | 157375130 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
|---|
| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family
[TIGR01406] DNA polymerase III, epsilon subunit, Proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000133992 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000148516 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATATCG TTTCAAGTGC AAAACGTCAG GTTATTCTGG ATACAGAAAC CACAGGTATG
AACCAAGGGG CCGGCGCCAT CTACCTTGGA CACCGTATCA TCGAAATTGG TTGTGTGGAG
GTGATTAATC GTCGCCTAAC CGGACGCCAT TATCATGAGT ACATCAATCC GCAACAGATC
ATCGATGAAG AAGCGATTGA AGTTCACGGT ATTACCAATG AATATGTCGC TAACAAACCC
AAATTTGCCG AGATTTCACA AAGTTTTATC GATTTTATCG ATGGCGCCGA AGTGGTGGCT
CATAATGCGA GCTTCGACGT TAACTTTATG GATCACGAGT TTTCTTTGCT GCAGCCGCGA
GGTCCGAAAA CGGCGGATAT CTGTCAGATT CTGGATACTC TGGATATTGC AAAATTTTTG
CACCCGGGGC AGAAAAATAA CCTGGATGCC TTGTGTAAGC GATACGGTAT AGATAACTCT
CGCCGGGAAC TCCACGGTGC TTTACTCGAT GCGGAGATCT TAGCCGACGT CTACCTGATG
ATGACGGGTG GTCAGACTAA GTTCAACCTT TCCGGTGATA AGGCTGGAGA AGGTGAGGGA
GGTATCATTC GTTTAAACAG TAATAGAGCA AATCTTAAAG TGATCAGAGC AACGGCCGAT
GAACTAACTA AGCATGAAGA AAGATTAGAT TTAGTTGCAA AATCAGGACA ATGTATTTGG
CGAGGATAG
|
|---|
| Protein sequence | MNIVSSAKRQ VILDTETTGM NQGAGAIYLG HRIIEIGCVE VINRRLTGRH YHEYINPQQI
IDEEAIEVHG ITNEYVANKP KFAEISQSFI DFIDGAEVVA HNASFDVNFM DHEFSLLQPR
GPKTADICQI LDTLDIAKFL HPGQKNNLDA LCKRYGIDNS RRELHGALLD AEILADVYLM
MTGGQTKFNL SGDKAGEGEG GIIRLNSNRA NLKVIRATAD ELTKHEERLD LVAKSGQCIW
RG
|
|---|
| |