Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1985 |
Symbol | |
ID | 5612799 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2400317 |
End bp | 2402152 |
Gene Length | 1836 bp |
Protein Length | 611 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640932869 |
Product | AsmA family protein |
Protein accession | YP_001473722 |
Protein GI | 157375122 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0885974 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0733894 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACCTG TTATGAAAAT ATTGAAATGG TTTTTTGTTG TATTTTTTAT TCTCATCATC TCATTGGCGG CCTACTTGAC GCTGGTGTTT GATCCCAATG ATTTTAAACC TCAGCTTGTT GACGCCGTAA AAGAGAATAC GGGGCGCGAC CTTGTGGTCG CAGATAAGTT GTCATGGACA TTCTTTCCAT CGATTGGCAT AAAACTCTCC AAGGTTTCTC TGTCAAACCC ATCGGGCTTC GATACCAGCT CCATGTTGGA AGTGAATGAA ATTGTGGCAG AGGTCGCTCT GATGCCTTTG TTCAGCAAGC AAGTTGAAAT TGCTCAGCTG AATGTCGATG GACTGACGGT GAACCTGGAA ACGCGTATCG ATGGTCAAAC CAGCTTCGAT GGTCTTGAGG GGAGCAAGAG TGCAGGCAAG CCTGCTGCTG AACCGAGTTC TCAATCAGGT AAAGGTTTGG CTGGCTTGAA TATCGGTGGT GTTGCCATCA CTAATACCCA AATCCGGATG CTGGATGAAA AGACCGGGAC AGAGCAGCTC TTCAATCTGG AAAAGTTAAC CTTAGGTCAA TTTGCATTAG GGGAGTTCGC ACCACTGGAA TATCAGTTTA ATGCAGAGCT TCCGGATATG ACCCTATCAA GCCATGGTGA AGGCCTGATT AAGGTAGACG CTTCCATGCA GGCGATTGAG TTAAAAGATC TCAAGATCCT CAACTCTGTT GCAGGAGAAG GCATACCGAA TAAAAAGCTA GATATCAGTC TACTTACTCA GGTATCGATA GCATTAGATA AAAAACGATT AAAACTCTCT TTAGAGGAGT TCATTGCCGA TCAAATAGAG GCGAAAGGAG AGGTTAGCGT TGCCTACGGT GGTAAGGTGC CCAATATTGA CGGCCAATTG AGCTTCGGTG AGATTGATTT AGATAAATTT ATGCCTCCCA GCGATGCACC GAGTCAGTCA GATGATAAAC AGACGCAAGC AACATCGGCT CAAGAACCGG ATCTGTCGGC AATGAAGTTA GTTAACTTCA AACTGGGTGT GACCGCAGAG TCGATAAAGG TCGCCAATAT GCTCACCAGC AAGTGGGTGA TGAACCTCGC ATTAAAAGAT GGCGTATTAA ACCTGAGTAA GCTTAGTGCT AATCTTTACA AAGGTAAGCT GTCTGTCACG GCGCAAGTCG ACGCTCGAAA ATCTGTTCCG AGTTACAGTT TTGAGAAATC GGTAGAAAAG GTTCAGATCC GTGAACTGTT GAAAGATGCT GCAGAGATCG ATCTATTGGC CGGCACTGCA AACTTTACAG TGAAAGGAAA AGGGCGAAGC TTAATAACGG CTAATATGAA AAAAAATCTT GCCGCAAAAG GTCAGTTTGA AGTTTCAGAT GGCGCGTTAT ATGGAGTCAA TATCCCTCAG ATGCTCAGGG ATGCGCAAGC CAAGTTGAGT GGTGATCTCT CTTCAACCGC TAGCGTCGAG AAAAAAACCG ATTTTACCAG TTTAACCGGA TCATTTACGC TTGTTAATGG TGTTGCTTCT AACCCTGATC TACTCATGGC CTCCCCATTA ATTCGACTCT CTGGTGCCGG AACCGCCAAT ATTGTCACAG AGGCATTAGA TTACTCTCTG ATCACCTCGG TAGTCGGCTC CCTCGAGGGA CAAGGCGGAG GAGAACGGGA GGCGTTACAT GGCGTCGAAA TTCCATTTGC TATCTCTGGC ACATTCTCTG AGCCAAAGTT CGCTCTGGAT ACCGCAGCCC TGTTCGATGC TAAGTTGAAG CAGGAGACTG AAAAGGTAAA AGATAAATTA AAAGATAGTC TCTTAAAGAA ACTGGGTGGA TTTTAA
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Protein sequence | MEPVMKILKW FFVVFFILII SLAAYLTLVF DPNDFKPQLV DAVKENTGRD LVVADKLSWT FFPSIGIKLS KVSLSNPSGF DTSSMLEVNE IVAEVALMPL FSKQVEIAQL NVDGLTVNLE TRIDGQTSFD GLEGSKSAGK PAAEPSSQSG KGLAGLNIGG VAITNTQIRM LDEKTGTEQL FNLEKLTLGQ FALGEFAPLE YQFNAELPDM TLSSHGEGLI KVDASMQAIE LKDLKILNSV AGEGIPNKKL DISLLTQVSI ALDKKRLKLS LEEFIADQIE AKGEVSVAYG GKVPNIDGQL SFGEIDLDKF MPPSDAPSQS DDKQTQATSA QEPDLSAMKL VNFKLGVTAE SIKVANMLTS KWVMNLALKD GVLNLSKLSA NLYKGKLSVT AQVDARKSVP SYSFEKSVEK VQIRELLKDA AEIDLLAGTA NFTVKGKGRS LITANMKKNL AAKGQFEVSD GALYGVNIPQ MLRDAQAKLS GDLSSTASVE KKTDFTSLTG SFTLVNGVAS NPDLLMASPL IRLSGAGTAN IVTEALDYSL ITSVVGSLEG QGGGEREALH GVEIPFAISG TFSEPKFALD TAALFDAKLK QETEKVKDKL KDSLLKKLGG F
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