| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1951 |
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| Symbol | |
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| ID | 5610343 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2354966 |
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| End bp | 2355607 |
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| Gene Length | 642 bp |
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| Protein Length | 213 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640932835 |
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| Product | putative nitrate/nitrite response regulator; NarL |
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| Protein accession | YP_001473688 |
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| Protein GI | 157375088 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0120802 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.965323 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTACAG CACAAATATT ACTGGTTGAT GACCACCCCA CTCTGCGCCA AGGTTTGGCT
CAACTTATCT CCTTAGAAGA TAACCTGGAC GTTGTCGCAC AGGCAGGCTC GGGGGATGAG
GCGATAAGCC TTGCCATAAA GCATTCACCG GATCTGATTT TACTCGATCT CAACATGAAG
GGCTTAAGCG GCATAGACAC CCTAATCGCC CTTAAACGCG CCGAAGTGCA GAGTAAAATC
GTCATCTTCA CCGTATCAGA CAGTGAAAGT GATGTGTTGC AGGCCATCAA GTTCAATACC
GATGGTTACC TCCTGAAAGA CTCGGAGCCA GAAGAGCTTA TCGAGAAAAT CAATCTCGCC
ATCCAGGGGG AGTTTGTGAT CAGCAACCCG CTAACCCAGA TCATGGCAAG ATCGTTGAGA
CCCAACAGTA AGAAAGTCTC ACCACTTGAA AGCCTCACCC AACGTGAGCT GCAAAACCTC
AAGCTTATCG CCGCAGGCAA GAGCAATAAA GATATCGCCA ACAAGCTCGG CATCGCCGAG
ACGACGGTCA AGGTTCACGT GAAGAACCTG CTTAAAAAGC TGGGCTTAAA GAGCCGGGTC
GAGGCGGCGG TATGGGCGGT GGAGCATAAG ATCAGTCATT AA
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| Protein sequence | MTTAQILLVD DHPTLRQGLA QLISLEDNLD VVAQAGSGDE AISLAIKHSP DLILLDLNMK
GLSGIDTLIA LKRAEVQSKI VIFTVSDSES DVLQAIKFNT DGYLLKDSEP EELIEKINLA
IQGEFVISNP LTQIMARSLR PNSKKVSPLE SLTQRELQNL KLIAAGKSNK DIANKLGIAE
TTVKVHVKNL LKKLGLKSRV EAAVWAVEHK ISH
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