Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1942 |
Symbol | |
ID | 5611370 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2342318 |
End bp | 2344330 |
Gene Length | 2013 bp |
Protein Length | 670 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640932828 |
Product | peptidase S15 |
Protein accession | YP_001473681 |
Protein GI | 157375081 |
COG category | [R] General function prediction only |
COG ID | [COG2936] Predicted acyl esterases |
TIGRFAM ID | [TIGR00976] putative hydrolase, CocE/NonD family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGGTTG TCGAACACTT CACACACAAA ATCCGACAGA TCGAACACTG CTGGATCCCG ATGGCCGACG GCATTCGTCT GTCTGCCCGT ATCTGGATGC CCGAGGGCGC AGAAACTAAG CCTGTACCGG CGATTTTTGA ATATATTCCT TATCGTAAGC GTGATGGGTC GAGATTACGC GACGAAACCA TGCATCCTTA TTTTGCCGGG CACGGCTATG CCTGTATCCG TGTCGATATC CGTGGTAGCG GCGATTCGGA GGGCGTGCTG ACCGATGAAT ACCTGCAGCA GGAACTCGAC GACGGTGTAG CCGTTATTGA GTGGCTGGAA AAACAGCCGT GGTGCGACGG AAACGTCGGT ATGTACGGTA TCTCCTGGGG GGGATTCAAC GGCCTGCAGA TTGCGGCGAT GCAACCGCCA CAGCTTAAGG CAATCATCAG CGTTTGCTCT ACCGATGACC GTTACGCCGA TGATGTGCAC TATATGGGAG GCTGCCTGCT GGGTGATAAC CTTTCATGGG CTTCGACTAT GTTTGCCTAC AACTCCCTGC CGCCGGATCC GCAAATTGTC GGTGATAAGT GGCGCGAGAT GTGGTTTGAG CGCCTTAAAG GCAGTGGCTT GTGGCTCGAT ACCTGGCTTA ATCATCAGCA CCGTGATGAG TACTGGCAAC ATGGCTCCAT CTGCGAAGAT TTCTCCAAGG TGCAGACCCC GGTTATGGCG GTGAGCGGCT GGGCCGATGG ATACAGTAAC GCGGTTTTTC GCCTGATCAG CAATCTGACT GGTCCGAGGC AGGGGCTGAT TGGCCCGTGG AGTCATAAGT ATCCCCATAT TGGCGTGCCC GGCCCGGCTA TCGGATTTTT GCAGGAATGC CTGCGTTGGT GGGATAAATG GCTGAAGGGG ATTGAGACCG GCATTATGGA CGAGCCAATG CTGCGGACAT GGATGCTCGA CAGTATGCCT CCGTCGACTT TTTACCATCA GCGCTATGGC CACTGGGTCA GTGAGCCCTC CTGGCCGTCA CCCAATATCG GGACACTTGC CTTCAAGCTT GATAAACATC GTCTGGTCGG CGAGGGCGCA GAGGTTGAAG AGGAGGAGTT GTGTTTGCAG TCGCCATTGA GTAATGGTCT GTTTGCCGGC AAATGGTGTT CATATAGCAC GACTCCGGAT CTGCCCCATG ATCAGCGTGA AGAAGAGGGC GGCGCTTTAA TTTTCACAAC CGATCCTCTC GACACTGCTG TTGAGATCAT GGGGGCCCCG GTGATCGAGC TGGTATTATC GGCCAGTAAA CCAGTGGCGA TGGTAGCTGT GCGGCTATCT GATGTGCACC CTGACAACAA GAGCACACGG GTAACTTATG GCCTGCTGAA CTTGACCCAT AGGGACAGCC ATAGCGAGCC GACACCGCTG GAACCGGACA AGCGCTATCG TGTAAAGCTG CAGCTTAACG ATGTAGCCCA GATCTTTCCC AAGGGCCATC GGATCCGGAT TGCGGTTTCC TCGTCATATT TCCCATTGGC CTGGCCTTCT CCTGAGTCGA CGCAGCTCAG GATCTACACA GGTTGCAGTT GCTTGATATT GCCTACCCGA ACTCCACGCA AAGAGGCTAT CACTTTCCCC GAAGTAGAGG CTTCAGCCAG CGGTGCCAAG CAGCAGCTTC ATGAGGGGCA TCATAACTGG CGGGTGATCC GTGAGTTGGA CAAGGATCTG TCGACCTTGG AGGTCATTAA CGACAGTGGT ACTTACCGGC TTGAAGATAT CGATCTGATT GTAAAGCGCG AGACGAAAGA GTGGTACTCC TATCAGTGCG ATGACTTCCA GTCCCCGAAG GGCGAGACTC TCTGGCGGTG GGGATTTAAG CGAGATGACT GGTCGGTAGA GACCGTCACC CGTACCATAC TGCACTGCGA TGAGTCCTAT TTTTATCTGG ATGCAGAACT CGATGCCTAT GAGGGTGACA AGCGAGTTTA TTCACAAAAC TGGAACCTTC GCATTAAGCG TAATTTAGTT TGA
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Protein sequence | MKVVEHFTHK IRQIEHCWIP MADGIRLSAR IWMPEGAETK PVPAIFEYIP YRKRDGSRLR DETMHPYFAG HGYACIRVDI RGSGDSEGVL TDEYLQQELD DGVAVIEWLE KQPWCDGNVG MYGISWGGFN GLQIAAMQPP QLKAIISVCS TDDRYADDVH YMGGCLLGDN LSWASTMFAY NSLPPDPQIV GDKWREMWFE RLKGSGLWLD TWLNHQHRDE YWQHGSICED FSKVQTPVMA VSGWADGYSN AVFRLISNLT GPRQGLIGPW SHKYPHIGVP GPAIGFLQEC LRWWDKWLKG IETGIMDEPM LRTWMLDSMP PSTFYHQRYG HWVSEPSWPS PNIGTLAFKL DKHRLVGEGA EVEEEELCLQ SPLSNGLFAG KWCSYSTTPD LPHDQREEEG GALIFTTDPL DTAVEIMGAP VIELVLSASK PVAMVAVRLS DVHPDNKSTR VTYGLLNLTH RDSHSEPTPL EPDKRYRVKL QLNDVAQIFP KGHRIRIAVS SSYFPLAWPS PESTQLRIYT GCSCLILPTR TPRKEAITFP EVEASASGAK QQLHEGHHNW RVIRELDKDL STLEVINDSG TYRLEDIDLI VKRETKEWYS YQCDDFQSPK GETLWRWGFK RDDWSVETVT RTILHCDESY FYLDAELDAY EGDKRVYSQN WNLRIKRNLV
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