Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1938 |
Symbol | |
ID | 5610331 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2336643 |
End bp | 2337917 |
Gene Length | 1275 bp |
Protein Length | 424 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640932824 |
Product | nitrate/nitrite transporter |
Protein accession | YP_001473677 |
Protein GI | 157375077 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG2223] Nitrate/nitrite transporter |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATATTC AACTGCGTCG TTCTTACCAG GCTTTAACAC TTGCCACCTT GGCTTTTGCT GCATGTTTTT CTGTTTGGAC ACTCTATTCA ATCATCGGCA TCGAGGTCAA AGAGCGTTTG GGTTTGAGCG CAACCGAGTT CGGTTTTCTG CTTGCTGCTC CCATTTTTAC CGGCGCAATC TTTCGTGTTC CTATAGGCTT TATGGCTGAA AAAGTATCAT GCCGTAATCT CTTTTTCTGG CAGATGTTGC TCGCCGTCCC TCCGTTATTC TACCTGCCTC ATATAGAAAC CTATTCGGGT TATATCTTGA TTGGTTTCGT GCTGGGGCTG ACTGGAGTCT CGTTTACGAT AGGCATTCGT TATGTCACCG ACTGGTTTGA GACTAAACGT CAGGGTTTTG CACTGGGGGT GTTTGGTGCG GGTAATGCGG GCGCCGCAAT CACCCTGGTT TTGGTGCCTT TTATTGTCGA TATCTTTGGT TGGCAACAGA TAGGTTACGC CTACGGGATT GGCATGATCT TTATGGCGGT GCTGTTTCGT TTGATGGCGC CTGAAGTGAA TGAGTATTAT CAGAAACAGA GAGATAGTCA TGATATGGCG TTTCATATGG CGCCCCTTAA AGATCTGCAG GTGTGGCGTT TCGGGCTCTA CTATTACTTC GTATTCGGCA GTTTCTTAGC GTTAATTCTC TGGCTGCCCC ATTATTATGT CTCCGCTTAC GAGCTGTCTC TGACTCAAGC TATGGCGTTG ACCTTACTCT TTGTCACCAG CTCGAGCATG GTCAGAGCCG TGGGCGGCTG GTTCGCCGAT ACTTATGGGG CGAGGGCGGT GAATTGGACA GCCTTCTGGA TCTGTATGGT GTGTCTGTTT TTCTTGAGTT ACCCGCCGAC GACCATGATC ATCCATGGTG TATCTAAAGA TGTTGAAGTC TCTTTCGAAG TGAATGTCTG GCTGTTTACC CTGTTGATTT TCATCATTGG TATCGCCCAG GGCTTTGGTC GAGCCAGCGT GTATAAGACT ATCTATGATT ACTATCCACA TCATATGGGC AGTGTTGGGG GCATTGTCGC CGCCATCGGT GCATTAGGTG GATGTACGCT TCCTATCATG TTCGGTTTTG CCGTCGATCT GATCGGCGTC TATAGTGCCT GCTTTATGTT GCTCTATGGT GTGTTGGCGA CCTGTATGGT GGTGATGTAC TTGGCGCTAA GAGCCGAGCG ACATCAGAAG CTGGTGAGAG AGGCGATAGC CAATAACTTT TTAGAACAAG ATTAA
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Protein sequence | MDIQLRRSYQ ALTLATLAFA ACFSVWTLYS IIGIEVKERL GLSATEFGFL LAAPIFTGAI FRVPIGFMAE KVSCRNLFFW QMLLAVPPLF YLPHIETYSG YILIGFVLGL TGVSFTIGIR YVTDWFETKR QGFALGVFGA GNAGAAITLV LVPFIVDIFG WQQIGYAYGI GMIFMAVLFR LMAPEVNEYY QKQRDSHDMA FHMAPLKDLQ VWRFGLYYYF VFGSFLALIL WLPHYYVSAY ELSLTQAMAL TLLFVTSSSM VRAVGGWFAD TYGARAVNWT AFWICMVCLF FLSYPPTTMI IHGVSKDVEV SFEVNVWLFT LLIFIIGIAQ GFGRASVYKT IYDYYPHHMG SVGGIVAAIG ALGGCTLPIM FGFAVDLIGV YSACFMLLYG VLATCMVVMY LALRAERHQK LVREAIANNF LEQD
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