| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1936 |
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| Symbol | |
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| ID | 5611323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2328704 |
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| End bp | 2332459 |
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| Gene Length | 3756 bp |
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| Protein Length | 1251 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640932822 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_001473675 |
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| Protein GI | 157375075 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATCGA CTCATAGAGA AGCTAGCCCC GAAAACAGCC CTGCGCTTAG CCCTAAGGAT
GGCCCAGACG TGACTAAAGG CCGCTCTAAG CCCCTCGATA CTCTCACCCT GCCCTTTGGC
GGTAGCCGCT TAATTGAAGC CAGTGCAGGA ACCGGTAAAA CCTTCACCAT CGCCGGTCTG
TATGTGCGTC TGTTGCTGGG CCATGAGATA GAAAAGCCAC TGAGCTGCGA GCAGATTCTG
GTAGTCACCT TTACCAATGC CGCCACGGGA GAGCTAAGGG ATCGAATTCG CCGCAAAATT
CAGCTGGCCT ACCGCCGCTT TATCGGCCTG GAAACCGATG ATGATCTGAT TGAATCTCTC
TATCGACTCA CGCCCGAGAG TGAACGCCAT CTGGCACTTA AGCGTCTGGA TTTAGCCCTC
AAGTCACTCG ATGAAGCGTC TATCTTTACC ATACATGGTT TTTGTCAGCG AATTTTGGCC
GACATGGCGT TCGAGTCATC CCTGCTGTTC GAGTCAGAGT TCACCTTAGA TGACAGCGAG
TTTCTGCACC ACGCCGTGCG CGACTTCTGG CGTGAGCAGT GCTACCCATT GCCTGAGTAT
CTGGCCGAGA TAATTCAGAA GAAATTTGCC GATCCCGATG CGCTATCCAA GCAGCTAAGG
CCGCTGCTGG GCGCAAGCCA GGCCAGCGCT CAGCCGGTGC CGCAAGAGTT TACAAAACTG
CAGCAAACGC TCACTCAAAG CTTAAGTCGT CTAAAACTTA TCTGGCCCCG CGAGCGGGAC
GCTATCGAGA CCTTGCTGCA TGCTTTACCG CTGAGCGGCG TGAGATTCGG AAAAAAAGCT
GACGCTTACC CTAAGCTCGC TATCATGCTC GATGCCATGG ATAACTGGTG CAAATTCAGC
AACAGTTTAC CGCCAATGAA GGTGATGGAG AGTCTGTCGC TGAGTGAGCT TAAGCTTAAC
AAGGGGGGCG AAGTGCCCAC GCCGGAGCAA GCGCCGGTAC TCGATCATAT CGAGCGCCTG
TGTGCGCTTA TCAAAGATTT TATTCCAAGC TTTCTCTTTT GCGCACGAAA CGGTATCTCG
GCTCGCTTTG CCCAGCAAAA ATCTGAGCGT AACCTGCTGA CGCCCGACGA TCTGCTGATC
ACCCTGGAAC AAGCCCTGCG TCCAAACCAG GAAGAGGTGA GTGGACAAGC AATAAGTCTG
GCCAACACCA TAGCCAAACG TTTTCCTGTG GCCCTTATCG ATGAATTCCA GGATACAGAT
CCGCTGCAAT TTGCTATCTT CAACCGGATA TACCAACAGC CCTCTGTCGA TGCAATGGGC
TCTGATGACT CGCTGATAGC CATCGATGAA GCCACAGCAG GAACCTCATC GAAAAATCTG
AGTCTCTTGA TGATTGGCGA CCCGAAACAG GCGATCTATG CCTTCAGGGG CGCCGATATA
CACACCTATA TTCAGGCGCG CGAGCAAACA TCCGAGCACT ATAATCTCGA TACTAATTAC
CGCTCCAGCC GTAACATGAT TTTGGCGGTC AATGCCCTGT TTGAGAATCG TGATGATGCC
TTTATCAGCC AGGCCATCCC ATTTGAATCG GTGCTGCCCT CCCCCTTTGC CGACAACAAA
GTATTAGTCG AGAAATCGAC CACTACATCG GCCCTGAAAA TTAAACTGCT TAGCGAAGAT
CCCGAAAAAG GCCTCAATAA AACCACCGCC AGAAAGCATT TAGCCGAAGA TGCTGCCAGC
GAAATCGCAC GGCTTCTCAC CGAATCGCAA GATGGTGAGT GTACGATTAG TGAAAAGCCG
CTCAAGGCCA AAGATATCGC GGTGCTGGTA CGTGACAGAA ATGAAGCCGC GGTGATCAAA
GAGTCACTGT CGAACAGGCA AATTGGTGCG GTATTCCTTA GCCGGGACAG TGTATTTAAC
ACCCTCGAAG CCCGAGAAAT GGCGCTGGTA CTGCACGCCT TGGCCACCCC AAAAGATGAG
CGCGCCCTGC GTTCGGCCTT GGCGACCTCC CTGCTCGGTT ATAACGCCCT GGCTATTCAT
GGCTTTAATC AGGATGAGAT GGTAAGACAA ACCCTGCTGG AGCAATTTGA TGGCCTGCAT
CATAACTGGC TAAGACGCGG CGTCATGCCC GCACTCTTGA ATTTGGCCAA CGAAACCAAG
CTTATCGAAC GCCTGCTTCA AAGCGAAGAT GGTGAGCGCC GTCTGACCGA TTTCAGGCAC
CTTGCCGAGC TGTTACAGCA AAAGGCCACC GAACTCGATG GGATCAGTGC CCTGGTCAAC
TGGTACGAGC AAGCCCTTAT CGAGAACCAT GCCAATGAAG AGGCGCAGCT CAGACTCGAA
AGTGAGCAGA ACCTGGTACA GATTGTCACC ATACATAAGA GTAAGGGGCT CGAGTATCCT
GTCTGTTTTA TCCCCTTCGT CAGCTTAGCC CGGGATAATC GCCGTAAACC TGCGCCTATG
CTCTACCATG AAAATAACAA GCTTGTGTGG GATATAGAGC AGAGCGATGA GGGTTGGGAG
CGGCATAAGC GGGAAAATCT CGCCGAGGAT CTGCGCCTGT TGTATGTCGC TATGACTCGC
CCCGTCTATC AGTGCTATCT CTATATCGCC AACCACTGCC GCTTCACTAA AAAAGCGGGG
ATCACCAGTC AGCTCCATGA AACCGGTATA GGCTACCTGC TTGGCATAGA AGAAAAAGCC
TGCGAGTTTT CGCTTATCGA AACATCTGCA AAACGTCTGA TGAGTGAGGC GATTAGTGTC
TGTGAGATGG CGGATGATGT CTCAAGCCAA GTCTTAGAGA AAATGTCGGA TGACCAAGAG
TTATTAGCAC CTAAGGTGCT TAAACGTCGA CTCTACACTC CATGGCGTGT CGGCAGTTAT
TCGGGCCTGG TAAAAGACTT GCCTCATGAG CGGGTGCTGC CGGGGGCGGA TGATGAAGCC
TTTCCGGAAC TCGAGGAGAT CAAGGATGAG CTTGACCCTC TGCCTTCTCG TTTCACCTTC
GAGCGCGGTG CTAATGCAGG TAGCTTTATG CACTTAGTGC TCGAGCTGAT TGACTTTACC
CAAGCCGAAA ATGGACTCAC CGAACAGTTA CCTGTCGCCA TGGAGAGGTA TGGCATCGAT
GAGTCCTGGC TCGACGTGCT GACTCACTGG TATTTGGATC TACTCGATGC GCCCATCGTA
CAGGATGGCT CACTCAAACT TGGGCAGTTA ACCAATAACC AGAAACTGGT GGAGATGGAA
TTCTACCTCC CTATCGCGGC GCTAAAGGCC GATAAGCTCA ATGCATTACT CCAAGAGTAT
GGCTACAGCG CGGGGCTTAA CTTCGAGTCG CTCAAAGGCA TGCTCAAAGG CTTTATCGAT
TTGACCTTCG AGCATCAGGG TCAATTTTAT ATCGCCGATT ATAAGTCTAA CCATCTGGGC
GATGATTTCA CCCATTATGG GCCCGATTCA ATGCGCGGCG CGATCCGCAG CCATAGATAC
GATCTGCAGT ACATCATCTA TACCCTGGCG TTACACAGAT ATTTGAGCCT GAGAATGCCT
GATTACGATT ATGACCGACA TATTGGCGGC AGTTATTACC TCTTCCTGCG AGGTATGTCC
GTCGGTGCAC CTATGTCTGG GGTTTTCTAT GATAAGCCAG CTAAGGGGCT TATCGAGTCA
CTCGATGCTC TGTTCGACGA TGAGCAAACT GAATCAGATG CTCCATCAGC CCAAACAGCA
CAAGCGCAAA TAGAACAGAC GGAGCTTAAG CTATGA
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| Protein sequence | MSSTHREASP ENSPALSPKD GPDVTKGRSK PLDTLTLPFG GSRLIEASAG TGKTFTIAGL
YVRLLLGHEI EKPLSCEQIL VVTFTNAATG ELRDRIRRKI QLAYRRFIGL ETDDDLIESL
YRLTPESERH LALKRLDLAL KSLDEASIFT IHGFCQRILA DMAFESSLLF ESEFTLDDSE
FLHHAVRDFW REQCYPLPEY LAEIIQKKFA DPDALSKQLR PLLGASQASA QPVPQEFTKL
QQTLTQSLSR LKLIWPRERD AIETLLHALP LSGVRFGKKA DAYPKLAIML DAMDNWCKFS
NSLPPMKVME SLSLSELKLN KGGEVPTPEQ APVLDHIERL CALIKDFIPS FLFCARNGIS
ARFAQQKSER NLLTPDDLLI TLEQALRPNQ EEVSGQAISL ANTIAKRFPV ALIDEFQDTD
PLQFAIFNRI YQQPSVDAMG SDDSLIAIDE ATAGTSSKNL SLLMIGDPKQ AIYAFRGADI
HTYIQAREQT SEHYNLDTNY RSSRNMILAV NALFENRDDA FISQAIPFES VLPSPFADNK
VLVEKSTTTS ALKIKLLSED PEKGLNKTTA RKHLAEDAAS EIARLLTESQ DGECTISEKP
LKAKDIAVLV RDRNEAAVIK ESLSNRQIGA VFLSRDSVFN TLEAREMALV LHALATPKDE
RALRSALATS LLGYNALAIH GFNQDEMVRQ TLLEQFDGLH HNWLRRGVMP ALLNLANETK
LIERLLQSED GERRLTDFRH LAELLQQKAT ELDGISALVN WYEQALIENH ANEEAQLRLE
SEQNLVQIVT IHKSKGLEYP VCFIPFVSLA RDNRRKPAPM LYHENNKLVW DIEQSDEGWE
RHKRENLAED LRLLYVAMTR PVYQCYLYIA NHCRFTKKAG ITSQLHETGI GYLLGIEEKA
CEFSLIETSA KRLMSEAISV CEMADDVSSQ VLEKMSDDQE LLAPKVLKRR LYTPWRVGSY
SGLVKDLPHE RVLPGADDEA FPELEEIKDE LDPLPSRFTF ERGANAGSFM HLVLELIDFT
QAENGLTEQL PVAMERYGID ESWLDVLTHW YLDLLDAPIV QDGSLKLGQL TNNQKLVEME
FYLPIAALKA DKLNALLQEY GYSAGLNFES LKGMLKGFID LTFEHQGQFY IADYKSNHLG
DDFTHYGPDS MRGAIRSHRY DLQYIIYTLA LHRYLSLRMP DYDYDRHIGG SYYLFLRGMS
VGAPMSGVFY DKPAKGLIES LDALFDDEQT ESDAPSAQTA QAQIEQTELK L
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